Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5738 107 1e-18 seq5227 102 5e-17 seq5736 91.5 1e-13 >seq5738 Length=44011 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 34476 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 34417 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||||| || ||| Sbjct 34416 ATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 34357 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || ||||| || ||||| || ||||| || Sbjct 34356 TCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACG 34297 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 34296 AAGATCTGCATCTT 34283 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 34704 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 34645 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||||| || ||| Sbjct 34644 ATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 34585 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || ||||| || ||||| || ||||| || Sbjct 34584 TCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACG 34525 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 34524 AAGATCTGCAT 34514 >seq5227 Length=11794 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GG 34908 || || |||||||| |||| | ||||||||||| || ||||| ||||| Sbjct 2260 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2319 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| || | ||| || || | || ||||| || ||||| || ||||||| Sbjct 2320 ATGCTGTCG---GAC--GGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 2374 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 2375 CAAAGATCTGCATGATTC 2392 >seq5736 Length=80658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 56805 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 56746 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 56745 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 56686 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || || || || |||||||| Sbjct 56685 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACG 56626 Query 34971 AAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 56625 AAGATCTGCATCTTC 56611 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 57033 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 56974 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||||| Sbjct 56973 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG 56914 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || || || || |||||||| Sbjct 56913 TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACG 56854 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 56853 AAGATCTGCAT 56843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324601619836824