Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6666 196 4e-45 seq4038 107 2e-18 >seq6666 Length=19192 Score = 196 bits (216), Expect = 4e-45 Identities = 453/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| || || || ||||| | ||| || ||||| || || || | |||| Sbjct 10622 AGCTGCTTCTGGAGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 10681 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 |||||||| || || | | ||| || || || |||| || ||| || | | |||| Sbjct 10682 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 10741 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 |||||||| || || || || || || |||||||| |||| | |||||| | |||||| Sbjct 10742 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAG 10801 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || | ||| ||||| |||||| ||||| || | |||||||||| || || ||||| Sbjct 10802 GACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATT 10861 Query 30031 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTT 30089 | || |||||||| || ||| | ||| || | ||| || || | || Sbjct 10862 TCATTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTG 10921 Query 30090 C----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 | || || | || | ||| ||||| ||||| ||| || |||||| Sbjct 10922 CGCAGCTTGTGAATAACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCG 10975 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| || || || |||| ||||||||| ||||| || ||||| Sbjct 10976 GCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGGTCCG 11035 Query 30205 AGGTCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263 || || ||| |||| | | | | | || || | |||||| | | || | || || || Sbjct 11036 AGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATT 11094 Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30323 | |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 11095 GCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGAT 11154 Query 30324 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||||||||||||||||||| | ||| | ||| || || | |||||||||||| || || Sbjct 11155 GAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGG 11214 Query 30384 AAAC----TGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGACAAGACTCCCG 30439 ||| |||||||| || | | || ||| | ||||| || |||| || | Sbjct 11215 GAACACGTTGTCCCTT-AGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTG 11273 Query 30440 TGCCCGTCCTGTCTCC 30455 | ||||||| |||||| Sbjct 11274 TTCCCGTCCGGTCTCC 11289 >seq4038 Length=37899 Score = 107 bits (118), Expect = 2e-18 Identities = 188/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 48361 TCTCGAGCACGAGCTGGGCTATCCTGTCACCCCTCTCGACCCGAAAGGGGTTGCACCCAA 48420 ||||||| | |||||| || | | ||| || | || ||| | ||| | | | | Sbjct 17990 TCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCTTGACGGGGAAGTCCTCGGCCGCGT 18049 Query 48421 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 48480 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 18050 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 18109 Query 48481 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 48540 ||| || || || || || || |||||||| | || ||||| | ||||| ||| Sbjct 18110 TGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAGGCGCCACGCGCGCGTAGCAGCCGT 18169 Query 48541 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGA 48600 ||||| | | ||||||||||||| || ||| || ||||| | ||||| |||| Sbjct 18170 CGGGCACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGG 18229 Query 48601 CCGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 48634 | || ||||||| |||||| |||||||| Sbjct 18230 CGTCGTAGGCGGCCGACAGGTCCAGGCCCGCGGC 18263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408577346441759