Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq21 462 4e-125 seq544 271 1e-67 seq2518 269 5e-67 >seq21 Length=30282 Score = 462 bits (512), Expect = 4e-125 Identities = 1219/1836 (66%), Gaps = 81/1836 (4%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | |||||| || Sbjct 4348 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGTGAGCTT- 4290 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || ||||| |||| Sbjct 4289 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGGCTCT 4246 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | | ||| || | || ||| | | | |||| || ||||| Sbjct 4245 GGCAAATGTAGGCGCCGCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCC 4186 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | | || |||||||| || | Sbjct 4185 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGC 4126 Query 212833 CCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC-C 212888 | |||| || |||| ||| ||||| ||| |||||| |||| | || | Sbjct 4125 CGCTGTC-AT--TCAGGATCTGGTTGCGCACGTCGGGCGTCCAGATGCCCA-GCTCGATC 4070 Query 212889 AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGG 212948 || ||| | ||||| |||||| ||| ||| || || | ||||| | | | | Sbjct 4069 AGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTG 4010 Query 212949 TAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTG 213008 || | ||| || ||||| ||||||||| ||||||||| || || ||||| || || | Sbjct 4009 TACATGTTGGACGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAG 3950 Query 213009 GCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--C 213066 || ||||||||||| |||||||| || ||| | || ||||||| | || | | | Sbjct 3949 GCAGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGGCCGTGCTTG---ATCACGTTC 3893 Query 213067 GCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATG 213125 || ||| | ||||||| ||| ||| ||| | | || ||| ||||||| Sbjct 3892 TCCTTCAGCGCCGCCCAGTTCCACAGGCCCGAC--GACGGGGTG----ACGCCCCACATG 3839 Query 213126 TCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGC 213185 || ||||| |||||||| ||||| | || ||||||| | | ||| ||||| || Sbjct 3838 TCGAACTGGAAGATGCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGC 3779 Query 213186 TCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCC 213245 |||||||| | ||| ||||| || || || || ||||||||||| || || |||| | Sbjct 3778 TCCTTGGCGATCTCCATGGACGTCTCCATAGCCGCATAGTAGATGGTCTCGAAGATCTTC 3719 Query 213246 CTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 ||||||||| |||||| | | ||| | | ||||| | |||| | || Sbjct 3718 TTGTTGAGCTCGCGGGCCTCCTCGCTCTCGAACGCGAAGTTCATGAGGATGAACGCGTCC 3659 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTC 213364 || || |||||||| |||||||||||||| | ||| | || ||| |||||| | || ||| Sbjct 3658 GCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTC 3600 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 ||| |||||| ||||| |||||||| |||||| |||||||| ||| || ||||| Sbjct 3599 GGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGT 3540 Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAG 213484 ||| | | || | || || | ||||||| || |||| |||||||| ||||| Sbjct 3539 GACCTCGTAGAGCTTCTGGTAGTCGAACACG------CCCTCCTCCACAAACTTGGGCAG 3486 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || | |||||||||||| ||||||||||| | | | ||||||||||| | ||| Sbjct 3485 CGCCACCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTC 3426 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 | ||||| ||||||| | ||||| ||||| |||||||| ||||| ||||| |||| | Sbjct 3425 GCAGCACAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGAC 3366 Query 213605 AGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT 213664 | ||||||||||||||| |||| || ||||| | ||| | |||| || | Sbjct 3365 CGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAA 3306 Query 213665 CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTC 213724 ||| || | | || |||| | | | | ||| | | |||||||| ||| Sbjct 3305 CCACAGCTGCTGCGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTT---CTCGTACTTTTC 3249 Query 213725 GTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGG 213781 || || | || || | ||||||| | || ||||| || || | | ||| Sbjct 3248 ATAAAGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAGTCCAGG---GGCTTCATTGGG 3192 Query 213782 ACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCA 213841 || | || ||||| | || | | || |||| ||||||||| || || ||||| Sbjct 3191 GCAGAACAGACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCA 3132 Query 213842 CAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 ||||||| ||||||||| | | | | ||||| || ||| |||||||| Sbjct 3131 CAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTGCGCAG 3075 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || || || || || | |||||||||||| ||||| | ||||||||| || | |||| Sbjct 3074 GTCCAGGAACTCGAACACGTCCGCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTT 3015 Query 213959 CCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015 | |||| |||||||||||||| | |||| |||||| | |||||| | ||| Sbjct 3014 GCGCTTGCCTCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGG 2955 Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATA-CGAGCCGGAGGCCCTCAGGT 214074 | | || |||||| ||||| || || || || | | | | ||| | | || Sbjct 2954 GATGATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGCTATTC-GTGGCGCGGATGT 2896 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || |||| || || || || ||||| |||||||||| ||||| || | | | Sbjct 2895 TGTGCATGCTGATGCCGATACCCCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCG 2836 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || |||||| | ||| ||| || | | || || ||||||| ||| || | Sbjct 2835 TGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTT 2776 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 | || | | || ||| | ||| || || || ||| | || || | | |||||| | | Sbjct 2775 GTGGGCGCGGCGTGCCGGCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCG 2716 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGC 214314 | | |||| ||| ||||| ||| | | |||||| ||||||||| || || | Sbjct 2715 ACATGAGCTCGTACGTCTCGAGGGCGGCCTTAATGTCGCTCTTGTGGATGCCCAGCGC-C 2657 Query 214315 AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGC 214367 || | ||| | ||| ||||| || | ||| | |||| ||| || || Sbjct 2656 ACGCGCATAATCATCTGCTGCGGGCGCTCCA--CCACCTT----GCCGTTCACGCGGAAG 2603 Query 214368 AGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||| |||||| || |||||||| ||||||||| Sbjct 2602 AGGTAGCCGCGCTCGAGCGTCTTGAAGCCAAAGTAG 2567 >seq544 Length=17931 Score = 271 bits (300), Expect = 1e-67 Identities = 566/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 6727 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 6786 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||||||||| ||| || | | | || ||||| | | ||||||| | Sbjct 6787 CCAGTCGAAGGGGTTCTTGACGTTGTAGAGCTTGGGCACGCCCAGCGAGTACAGCAGGCG 6846 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| || ||||||||| ||||| ||| Sbjct 6847 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTCCAC 6906 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||||| | | | ||||| | ||| || ||||| || | || |||| | Sbjct 6907 GGGCAGCGAGTCGCACACGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCGTG 6966 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | |||||||| ||| ||||| || | | ||| || ||||| Sbjct 6967 CACGCGGCTCTCGGGAAGTTTGTTGACCAG---CTTGGAGTACATGAGGCACGCGAAGTC 7023 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| ||||| |||||||||||| |||||||||||| || || ||||||| Sbjct 7024 CGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGGGCATGAG 7083 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||| || || Sbjct 7084 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCAAC 7143 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGGA 48318 || |||||||| || | ||| | | || | | | ||| | ||| Sbjct 7144 CGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCCGCGGGTC---GCACCACTT 7200 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 |||||||||| ||||||||||||| ||| || |||||||| || || || || || | Sbjct 7201 GAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAACAGGTG 7260 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 || ||| | ||| | || || |||||||| | ||| | ||| | Sbjct 7261 GTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAGC---GAGTAGACCTCGGC 7317 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||||| ||||||||| | ||||| ||||||||| Sbjct 7318 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCAC 7377 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || ||| || ||| ||||| || || || || || || || ||||| Sbjct 7378 TTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTCGCCGCGAAGAA 7437 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 ||| || || || || | ||| |||||||||| || || | |||| | | | Sbjct 7438 GGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGCTTCTGCCAGTCGTTCAG 7497 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | ||||||||| || || | |||||||| || || || || |||||||| Sbjct 7498 GTCGTGCACCAGGTCCAACTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 7557 >seq2518 Length=24447 Score = 269 bits (298), Expect = 5e-67 Identities = 569/842 (68%), Gaps = 19/842 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 23780 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 23721 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | ||| || | | | || ||||| | | ||||||| | Sbjct 23720 CCAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTACAGCAGGCG 23661 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||| ||||| | |||| || | ||||||||| || || ||| Sbjct 23660 GTCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAGCTCCAC 23601 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||| | | | ||||| | ||| || |||||| || ||| |||| | Sbjct 23600 AGGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGATCTCGTG 23541 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| ||| ||||| || | | |||||| ||||| Sbjct 23540 CACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCAGGCGAAGTC 23484 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| || || |||||||| ||| |||| ||||||| ||||||||||| | Sbjct 23483 CGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATCAG 23424 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||||||||| Sbjct 23423 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCAC 23364 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGGA 48318 || |||||||| || | ||| | | || | | | ||| | ||| Sbjct 23363 AGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCCGCGGGTC---GCACCACTT 23307 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT- 48377 |||||||||| || |||||||||| ||| || |||||||| ||||| || | || | Sbjct 23306 GAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCTCGCAGCAGGTG 23247 Query 48378 -TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCA 48433 || | | | |||| |||||| | || || |||||||| | ||||| ||| Sbjct 23246 GTCCTTCTC-CACC-GCGTCCTTGATGTACGTGTCGATGAGCAGC---GAGTACACCTCC 23192 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||||| ||||||||| | ||||| ||||||| Sbjct 23191 GAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCCTCCGGCACCTGC 23132 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || || ||| || ||| ||||| || || || || || ||||| ||| Sbjct 23131 ACCTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAG 23072 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 ||||| || || || || | ||| |||||||||| || || |||| ||| Sbjct 23071 AAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTG 23012 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673 | ||| | ||||||||| || || | |||||||| ||||| || || |||||| Sbjct 23011 AGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTAC 22952 Query 48674 AT 48675 || Sbjct 22951 AT 22950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931438680254720