Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq544 232 1e-55
seq21 226 5e-54
seq2518 215 1e-50
>seq544
Length=17931
Score = 232 bits (256), Expect = 1e-55
Identities = 565/851 (66%), Gaps = 27/851 (3%)
Strand=Plus/Minus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| |||||||||||||||| | ||| |||||| ||||| ||| | || ||||
Sbjct 7563 TGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGTTGGACCTGGTG 7504
Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599
| ||| || ||| |||| | || | | |||||| | || ||||| |||||
Sbjct 7503 CACGACCTGAACGACTGGCAGAAGCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 7444
Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659
|||| ||||| || || || || || ||||||||||| ||| | || |||| |
Sbjct 7443 CTGGCCTTCTTCGCGGCGAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 7384
Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716
| ||||||||| ||| ||||| || |||||||| |||||||| ||||||||
Sbjct 7383 AACGAAGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 7327
Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CGTCG 25771
|| | ||| | ||||| || | ||| || || |||||||| | || || |
Sbjct 7326 AACATCCACGCCGAGGTCTACTC---GCTGCTCATCGACACGTACATCAAGGATACGATG 7270
Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
|| ||| | | ||||| | || || ||| || || || |||||| ||||||||
Sbjct 7269 GAGA-AGA-ACCACCTGTTGCGCGCTATTGAGACGATCCCGTGCGTCAAGAAGAAGGCGC 7212
Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
||||| | |||||| | || | | | ||| ||||| ||| | || |
Sbjct 7211 ACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGT 7152
Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
| ||||| || || |||||||| ||| || || || ||| |||||||||||||||||
Sbjct 7151 TCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCT-CCATCTTCTGGCTCAAG 7093
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| || ||||||||| ||| ||| |||||||||||||||||| | ||||||||
Sbjct 7092 AAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGC 7033
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070
| |||| || || || ||||| | ||| | | | || || ||||| |||| | |
Sbjct 7032 ATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTCAACAAA-CTTCCCGA 6977
Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
||| | ||| || ||| || ||||| || |||||| | |||||
Sbjct 6976 GAGCCGCGTGCACGAGATCGTCCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGA 6917
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
| ||||||||| | |||||| |||| ||||| ||||
Sbjct 6916 CTCGCTGCCCGTGGAGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTT 6857
Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAAC 26247
|||||||||| ||||||| | |||||| | ||| ||||||| ||| | |||
Sbjct 6856 CGTGGCCGACCGCCTGCTGTACTCGCTGGGCGTGCCCAAGCTCTACA--ACGTCAAGAAC 6799
Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307
|| ||||||| ||||| | || ||| || | || |||||||||||||| || ||| |
Sbjct 6798 CCCTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGC 6739
Query 26308 GTCGGCGACTA 26318
|| ||||| ||
Sbjct 6738 GTGGGCGAGTA 6728
>seq21
Length=30282
Score = 226 bits (250), Expect = 5e-54
Identities = 712/1090 (65%), Gaps = 55/1090 (5%)
Strand=Plus/Minus
Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG----CCTCGGGA-- 221476
|| || | |||||||||||| |||||| |||||||||| ||| || |||||
Sbjct 3748 GCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAG-CTCGCGGGCCTCCTCGCTCTC 3690
Query 221477 GAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| | |||| ||| | | |||| | |||| || || ||||| || ||||| ||
Sbjct 3689 GAACGCGAAGTTCATGAGGA-----TGAACG-CGTCCGCGAGGCCCTGGACGCCGATGCC 3636
Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595
|||||| | ||| | | ||||||| | ||| || | |||||| || ||||||||||
Sbjct 3635 GATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTC 3576
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655
||| | ||||| ||||| | |||||||| || |||||| |||||||||| |
Sbjct 3575 GATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTC 3516
Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715
||||| |||| || |||||||| | || || || |||
Sbjct 3515 GAACA---------CGCCCTC---------CTCCACAAACTTGGGCAGCGCCACCGAGGC 3474
Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775
|||||| ||||||||||||||||| | || |||| || | ||| || | |||
Sbjct 3473 CAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTT 3414
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835
|||| | ||| || || |||| | || || ||||| || ||| | |||||||||||
Sbjct 3413 GCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTA 3354
Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895
|||||| ||||| |||| ||||| | ||| || |||| || | ||| || | ||
Sbjct 3353 GAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCT-GCT 3295
Query 221896 G-GCGCTCACCGTCCTCTTGACTGC---ACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951
| ||| | | || ||||| || ||||| ||| || ||| ||| ||
Sbjct 3294 GCGCGTTGA---TCGTCTTGCGCGCGCGTCCCTC---CTTCTCGTACTTTTCATAAAGGG 3241
Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011
| ||||||| || || | ||||| || || || ||| || | |||||
Sbjct 3240 TCTCAAACTCCTCGCCCCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGAC 3181
Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068
|||| |||| ||| | | ||||||| |||||| || || || | ||||||||| |
Sbjct 3180 TCCA---CTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGT 3124
Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128
|| || || | | || ||| ||| ||||| ||| || | ||| |||| ||||
Sbjct 3123 AGAACAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACT 3064
Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188
| || | ||| |||||||| ||||| || |||| ||| | | ||| |||||| |
Sbjct 3063 CGAACACGTCCGCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTC 3004
Query 222189 CACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248
| ||||| ||||| | || ||||||| | ||| || | || | | || |
Sbjct 3003 CGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCAT 2944
Query 222249 TGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCAG 222305
|||| ||| ||||| ||||| ||||| | ||| | | || | | || |
Sbjct 2943 TGGA-CGAGCCGTTCGTGCCACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTG 2885
Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365
||||||||||| ||||| || ||||| ||||| |||||| ||||| ||
Sbjct 2884 --ATGCCGATACCCCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGA 2827
Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425
||||||| || ||||| |||| | | || ||| || || ||||||| || | |
Sbjct 2826 TGCCCTCAATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCG 2767
Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGAT 222485
| | |||||||||||| || || | ||||| || || | ||||| || |
Sbjct 2766 GCGTGCCGGCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCT 2707
Query 222486 CGTACGTCTC 222495
||||||||||
Sbjct 2706 CGTACGTCTC 2697
Score = 118 bits (130), Expect = 2e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 221063 CGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACC 221122
|||| ||| |||||| | ||| ||| |||| |||| | || || |||||| ||
Sbjct 4102 CGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGACG 4043
Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182
| ||| || || | ||||| | | | ||||| ||| || ||| |||| ||||||
Sbjct 4042 ATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATG 3983
Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242
|||||||||||| |||||||| ||||| ||| ||||||||||| |||||||||||
Sbjct 3982 GACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAGC 3923
Query 221243 CTGTTGCGCAGTCCG 221257
||||||||| |||
Sbjct 3922 GAGTTGCGCAGGCCG 3908
>seq2518
Length=24447
Score = 215 bits (238), Expect = 1e-50
Identities = 553/844 (66%), Gaps = 13/844 (2%)
Strand=Plus/Plus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| |||||||||||||||| | || |||||| ||||| ||| | || ||||
Sbjct 22944 TGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 23003
Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599
| ||| | | | |||| || | | |||||| | || ||||| |||||
Sbjct 23004 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 23063
Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659
|||| ||||| || ||| || || || ||||||||||| ||| | || |||| |
Sbjct 23064 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 23123
Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719
| || |||||| |||||| || ||||||||||||||||| |||||||| ||
Sbjct 23124 AATGAGGTGCAGGTGCCGGAGGCGCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 23183
Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776
| ||||| |||||||| | ||| || || |||||||| | |||| | |||
Sbjct 23184 ATCCACTCGGAGGTGTA---CTCGCTGCTCATCGACACGTACATCAAGGACGCGGTGGAG 23240
Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836
| || | ||| | | ||||| ||| || || || |||||| ||| |||| |||
Sbjct 23241 AAGGACCACCTGCTGCGAGCCATTGAGACGATCCCGTGCGTCAAGAAGAAAGCGCACTGG 23300
Query 25837 GCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896
|| | |||||| | || | | | ||| ||||| ||| | || || |||
Sbjct 23301 GCGCTCAAGTGGTGCGACCCGCGGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCT 23360
Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAA 25955
||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| ||
Sbjct 23361 GCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGCG 23419
Query 25956 GGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015
|| ||||| || ||| ||| || |||||||| |||||| | || ||||| | ||
Sbjct 23420 CGGCCTGATGCCTGGTCTGAGCTTCTCGAACGAGCTGATCAGCCGCGATGAGGGCATGCA 23479
Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGAC 26075
|| || || |||||||| | ||| | | | || | || || || | |||| |
Sbjct 23480 CACGGACTTCGCCTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGAGAGCC 23535
Query 26076 -CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNN 26134
||| || ||| | | || || ||| |||||| | |||||
Sbjct 23536 GCGTGCACGAGATCGTGCACGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACTCCC 23595
Query 26135 NNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGG 26194
| ||||||||| || ||| |||| |||||||||| ||||
Sbjct 23596 TGCCTGTGGAGCTGATCGGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGG 23655
Query 26195 CCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCG 26254
|||||| ||||||| | |||||| | | | |||||| || ||||||||||
Sbjct 23656 CCGACCGCCTGCTGTACTCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCG 23715
Query 26255 ACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCG 26314
||| ||||| | || ||| || | || |||||||||||||| || ||| | || ||||
Sbjct 23716 ACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCG 23775
Query 26315 ACTA 26318
| ||
Sbjct 23776 AGTA 23779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928750951843520
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