Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq544 232 1e-55 seq21 226 5e-54 seq2518 215 1e-50 >seq544 Length=17931 Score = 232 bits (256), Expect = 1e-55 Identities = 565/851 (66%), Gaps = 27/851 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 7563 TGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGTTGGACCTGGTG 7504 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || ||| |||| | || | | |||||| | || ||||| ||||| Sbjct 7503 CACGACCTGAACGACTGGCAGAAGCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 7444 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || || || || || ||||||||||| ||| | || |||| | Sbjct 7443 CTGGCCTTCTTCGCGGCGAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 7384 Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||||||||| ||| ||||| || |||||||| |||||||| |||||||| Sbjct 7383 AACGAAGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 7327 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CGTCG 25771 || | ||| | ||||| || | ||| || || |||||||| | || || | Sbjct 7326 AACATCCACGCCGAGGTCTACTC---GCTGCTCATCGACACGTACATCAAGGATACGATG 7270 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 || ||| | | ||||| | || || ||| || || || |||||| |||||||| Sbjct 7269 GAGA-AGA-ACCACCTGTTGCGCGCTATTGAGACGATCCCGTGCGTCAAGAAGAAGGCGC 7212 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| | |||||| | || | | | ||| ||||| ||| | || | Sbjct 7211 ACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGT 7152 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | ||||| || || |||||||| ||| || || || ||| ||||||||||||||||| Sbjct 7151 TCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCT-CCATCTTCTGGCTCAAG 7093 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||||||| ||| ||| |||||||||||||||||| | |||||||| Sbjct 7092 AAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGC 7033 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | |||| || || || ||||| | ||| | | | || || ||||| |||| | | Sbjct 7032 ATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTCAACAAA-CTTCCCGA 6977 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| | ||| || ||| || ||||| || |||||| | ||||| Sbjct 6976 GAGCCGCGTGCACGAGATCGTCCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGA 6917 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | |||||| |||| ||||| |||| Sbjct 6916 CTCGCTGCCCGTGGAGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTT 6857 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAAC 26247 |||||||||| ||||||| | |||||| | ||| ||||||| ||| | ||| Sbjct 6856 CGTGGCCGACCGCCTGCTGTACTCGCTGGGCGTGCCCAAGCTCTACA--ACGTCAAGAAC 6799 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || ||||||| ||||| | || ||| || | || |||||||||||||| || ||| | Sbjct 6798 CCCTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGC 6739 Query 26308 GTCGGCGACTA 26318 || ||||| || Sbjct 6738 GTGGGCGAGTA 6728 >seq21 Length=30282 Score = 226 bits (250), Expect = 5e-54 Identities = 712/1090 (65%), Gaps = 55/1090 (5%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG----CCTCGGGA-- 221476 || || | |||||||||||| |||||| |||||||||| ||| || ||||| Sbjct 3748 GCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAG-CTCGCGGGCCTCCTCGCTCTC 3690 Query 221477 GAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| | |||| ||| | | |||| | |||| || || ||||| || ||||| || Sbjct 3689 GAACGCGAAGTTCATGAGGA-----TGAACG-CGTCCGCGAGGCCCTGGACGCCGATGCC 3636 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||||| | ||| | | ||||||| | ||| || | |||||| || |||||||||| Sbjct 3635 GATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTC 3576 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| ||||| | |||||||| || |||||| |||||||||| | Sbjct 3575 GATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTC 3516 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 ||||| |||| || |||||||| | || || || ||| Sbjct 3515 GAACA---------CGCCCTC---------CTCCACAAACTTGGGCAGCGCCACCGAGGC 3474 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 |||||| ||||||||||||||||| | || |||| || | ||| || | ||| Sbjct 3473 CAGGTTGCACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTT 3414 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 |||| | ||| || || |||| | || || ||||| || ||| | ||||||||||| Sbjct 3413 GCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTA 3354 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||| ||||| |||| ||||| | ||| || |||| || | ||| || | || Sbjct 3353 GAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCT-GCT 3295 Query 221896 G-GCGCTCACCGTCCTCTTGACTGC---ACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | ||| | | || ||||| || ||||| ||| || ||| ||| || Sbjct 3294 GCGCGTTGA---TCGTCTTGCGCGCGCGTCCCTC---CTTCTCGTACTTTTCATAAAGGG 3241 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | ||||||| || || | ||||| || || || ||| || | ||||| Sbjct 3240 TCTCAAACTCCTCGCCCCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGAC 3181 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| ||| | | ||||||| |||||| || || || | ||||||||| | Sbjct 3180 TCCA---CTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGT 3124 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || || || | | || ||| ||| ||||| ||| || | ||| |||| |||| Sbjct 3123 AGAACAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACT 3064 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || | ||| |||||||| ||||| || |||| ||| | | ||| |||||| | Sbjct 3063 CGAACACGTCCGCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTC 3004 Query 222189 CACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 | ||||| ||||| | || ||||||| | ||| || | || | | || | Sbjct 3003 CGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCAT 2944 Query 222249 TGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCAG 222305 |||| ||| ||||| ||||| ||||| | ||| | | || | | || | Sbjct 2943 TGGA-CGAGCCGTTCGTGCCACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTG 2885 Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 ||||||||||| ||||| || ||||| ||||| |||||| ||||| || Sbjct 2884 --ATGCCGATACCCCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGA 2827 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 ||||||| || ||||| |||| | | || ||| || || ||||||| || | | Sbjct 2826 TGCCCTCAATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCG 2767 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGAT 222485 | | |||||||||||| || || | ||||| || || | ||||| || | Sbjct 2766 GCGTGCCGGCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCT 2707 Query 222486 CGTACGTCTC 222495 |||||||||| Sbjct 2706 CGTACGTCTC 2697 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 221063 CGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACC 221122 |||| ||| |||||| | ||| ||| |||| |||| | || || |||||| || Sbjct 4102 CGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGACG 4043 Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 | ||| || || | ||||| | | | ||||| ||| || ||| |||| |||||| Sbjct 4042 ATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATG 3983 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||||||||| |||||||| ||||| ||| ||||||||||| ||||||||||| Sbjct 3982 GACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAGC 3923 Query 221243 CTGTTGCGCAGTCCG 221257 ||||||||| ||| Sbjct 3922 GAGTTGCGCAGGCCG 3908 >seq2518 Length=24447 Score = 215 bits (238), Expect = 1e-50 Identities = 553/844 (66%), Gaps = 13/844 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| ||||| ||| | || |||| Sbjct 22944 TGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 23003 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 23004 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 23063 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 23064 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 23123 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | || |||||| |||||| || ||||||||||||||||| |||||||| || Sbjct 23124 AATGAGGTGCAGGTGCCGGAGGCGCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 23183 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| |||||||| | ||| || || |||||||| | |||| | ||| Sbjct 23184 ATCCACTCGGAGGTGTA---CTCGCTGCTCATCGACACGTACATCAAGGACGCGGTGGAG 23240 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | | ||||| ||| || || || |||||| ||| |||| ||| Sbjct 23241 AAGGACCACCTGCTGCGAGCCATTGAGACGATCCCGTGCGTCAAGAAGAAAGCGCACTGG 23300 Query 25837 GCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896 || | |||||| | || | | | ||| ||||| ||| | || || ||| Sbjct 23301 GCGCTCAAGTGGTGCGACCCGCGGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCT 23360 Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAA 25955 ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| || Sbjct 23361 GCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGCG 23419 Query 25956 GGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015 || ||||| || ||| ||| || |||||||| |||||| | || ||||| | || Sbjct 23420 CGGCCTGATGCCTGGTCTGAGCTTCTCGAACGAGCTGATCAGCCGCGATGAGGGCATGCA 23479 Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGAC 26075 || || || |||||||| | ||| | | | || | || || || | |||| | Sbjct 23480 CACGGACTTCGCCTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGAGAGCC 23535 Query 26076 -CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNN 26134 ||| || ||| | | || || ||| |||||| | ||||| Sbjct 23536 GCGTGCACGAGATCGTGCACGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACTCCC 23595 Query 26135 NNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGG 26194 | ||||||||| || ||| |||| |||||||||| |||| Sbjct 23596 TGCCTGTGGAGCTGATCGGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGG 23655 Query 26195 CCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCG 26254 |||||| ||||||| | |||||| | | | |||||| || |||||||||| Sbjct 23656 CCGACCGCCTGCTGTACTCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCG 23715 Query 26255 ACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCG 26314 ||| ||||| | || ||| || | || |||||||||||||| || ||| | || |||| Sbjct 23716 ACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCG 23775 Query 26315 ACTA 26318 | || Sbjct 23776 AGTA 23779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928750951843520