Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq21 147 3e-30 seq2518 109 7e-19 seq544 95.1 1e-14 >seq21 Length=30282 Score = 147 bits (162), Expect = 3e-30 Identities = 423/639 (66%), Gaps = 9/639 (1%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| | ||||| || || | ||||||||| | |||||| | | | Sbjct 2633 CCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGC 2692 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| ||||| ||||| ||| | |||| ||||| || || || || || Sbjct 2693 CCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACACTGTT 2752 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || || || || | || || |||| |||||||| | |||| |||| || Sbjct 2753 TAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGA 2812 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || ||||| | || || | | |||| ||| ||||| |||||||| || Sbjct 2813 CTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGG 2872 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 |||||| || || ||| || | | | |||| || | || || || || || | Sbjct 2873 GGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTAC-ATCCGTGGCACGA 2931 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || |||| || || || ||||| ||||| || |||| ||| || ||||| | Sbjct 2932 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACG 2991 Query 75570 TAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | ||| ||| |||||||| || |||| ||||| | || || ||||| | Sbjct 2992 TGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACG 3051 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 | || | | |||||||| || | || ||||| || |||| | || | | | Sbjct 3052 CGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGCGCG 3110 Query 75687 -GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || || || | | |||||| | || || || ||||||||| |||| |||| | Sbjct 3111 CGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGCCAAT 3170 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 || | ||| ||| ||||| || | | || || || |||| ||| || | ||| || Sbjct 3171 GGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCCCCTGGACTCTACGAGTGCTG-GGGCGA 3229 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 ||||||||| |||| || |||||| || ||||||| Sbjct 3230 GGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAGGG 3268 >seq2518 Length=24447 Score = 109 bits (120), Expect = 7e-19 Identities = 333/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG-TCTCGCTCCTTCGCCGAG 65079 ||||||| ||| | ||||| | || |||| ||| | | | ||| || | | | ||| Sbjct 23284 AGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCG-TCGTACCCGGAG 23342 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || ||||||||| ||||||||||| || || |||||| | || Sbjct 23343 CGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATC 23402 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || || ||||| || || ||||||| || || || || | Sbjct 23403 TTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTTCTCGAACGAGCTGATCAGC 23462 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || |||||||| | ||| ||| || ||| || ||| | | | || | | | Sbjct 23463 CGCGATGAGGGCATGCACACGGACTTCGCC-TG--CCTCATGTACTCCAAGC-TGGTGAA 23518 Query 65260 CCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | || ||| | | |||| |||||| | || || || || ||| | | Sbjct 23519 CAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCACGATGCCGTGACCATCGAGCACGA 23578 Query 65316 GTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| | ||| | || || ||| | || ||||| |||||||| | ||||| | Sbjct 23579 GTTCGTGCGCGACTCCCTGCC-TGTGGAGCTGATCGGCATGAACTCGTCGCTGATGTGCC 23637 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGG 65433 |||||||||||| ||| | || || || || || | |||| ||| | || | Sbjct 23638 AGTACATTGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGTCGAAGATCTAC 23696 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 ||||||||||| || || |||| ||||| | || || | || |||||||||||| Sbjct 23697 AACGCGAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTC 23756 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 23757 TTCGAGAAGCGTGTGGGCGAGTA 23779 >seq544 Length=17931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 331/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAG-TCTCGCTCCTTCGCCGAG 65079 ||||||||||| | ||||| | || |||| ||| | | | ||| || | | | ||| Sbjct 7223 AGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCG-TCGTACCCGGAG 7165 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || || || || ||||||||||| || || |||||| | || Sbjct 7164 CGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATC 7105 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || | Sbjct 7104 TTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGC 7045 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGA 65259 || || ||||| | ||| ||| || | |||| ||| | | | || | | | Sbjct 7044 CGCGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTCCAAGC-TGGTCAA 6989 Query 65260 CCCAC-TACCGAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | || | |||| | | |||| ||||| ||||| || || ||| | | Sbjct 6988 CAAACTTCCCGAGAGCCGCGTGCACGAGATCGTCCGTGAGGCCGTCACCATCGAGCACGA 6929 Query 65316 GTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| | | ||| | || ||| || | |||||||| |||||||| | |||| | Sbjct 6928 GTTCGTGTGCGACTCGCTGCCCGTG-GAGCTCATCGGCATGAACTCGACGCTCATGTGCC 6870 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTGG 65433 ||||||| |||| ||| | || || || || || | |||| ||||| | | Sbjct 6869 AGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGCCCAAGCTCTAC 6811 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 |||| ||||| || || |||| ||||| | || || | || |||||||||||| Sbjct 6810 AACGTCAAGAACCCCTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTC 6751 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 6750 TTCGAGAAGCGCGTGGGCGAGTA 6728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596509324099040