Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3061 154 4e-32 seq1187 100 8e-16 seq5150 98.7 3e-15 seq4743 87.8 5e-12 >seq3061 Length=24800 Score = 154 bits (170), Expect = 4e-32 Identities = 253/359 (70%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 302491 TCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACG 302547 || || ||||| || ||||| |||| ||| || || | | |||| ||||| ||| Sbjct 20255 TCCATACCGTCTTCACCGTACAGGAA--CTGGATAATCTCGC-CTTGCGCATTTCGGACG 20199 Query 302548 GTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAA 302607 || ||| |||| |||||| ||||| ||| | | ||| |||||||| ||| Sbjct 20198 GTACCATCGTAACGCGTCATAACCGACTCCATTGCCTTCACCAGACGGCGCTGAATGTAA 20139 Query 302608 CCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGG 302667 ||||| | || || ||||| |||||||||||||| ||||||||||||| || ||| Sbjct 20138 CCAGTCTCGGCCGTCTTCACAGCCGTATCAATTAGACCTTCACGACCACCCATGGCGTGG 20079 Query 302668 AAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCC 302727 ||||| | |||| ||| | ||| | | ||| |||| ||||||||||| Sbjct 20078 AAGAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAGTTCTCCACGAAACCACGACTT 20019 Query 302728 TCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 ||||| | ||||||| |||| |||| |||| || | | | ||||||| Sbjct 20018 TCGGGGCCCAAATCGTC---CTTGCCGTAGTGCGGCAACGTACGATGGTTGAAGCCGTAC 19962 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||||||| |||||||||||||| |||| ||| | ||| |||||||| ||||| Sbjct 19961 GGGATACGCTTTCCTTCAACGTTCTGCTGGCCCACGCAAGCAATAATCTGCGAGATATT 19903 >seq1187 Length=10420 Score = 100 bits (110), Expect = 8e-16 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | ||| || ||| ||||| || |||| ||| || || || | | | || Sbjct 5796 GGCGATGATACCGCAGATATCGCACACGTGCACGCGGTACGCGTCCGAGTTGGCGAACAG 5737 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || |||| | | ||||| || |||| |||||| |||||||| || || Sbjct 5736 GCGGTCCATGAGGAAGTTGGCCGAGCCGTGCGAGATCAGACAATCGCGCTCCATCTCTCC 5677 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| ||||| || | |||||| ||||| || || || | || Sbjct 5676 CATACGCAGACCACCCTCGCGCGCACGACCCTCCATGGGCTGGCGCGTCAGCATGGTCAC 5617 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || || ||||| || ||| || | ||||||||||| || ||||||||||| Sbjct 5616 GGGGCCACGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAA 5557 Query 251643 TGCGGGACCGATGAAGAT 251660 | ||| ||||||||||| Sbjct 5556 CGTGGGGCCGATGAAGAT 5539 >seq5150 Length=29312 Score = 98.7 bits (108), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || || ||||||||||| ||||| ||| | || || || || || Sbjct 14390 CTTGATGGCCGAAGCAAGGGCGCCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 14449 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 14450 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCAGCCAGCACGACCTTCACCTTCTG 14509 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACT--GCGATTCAAGGTTGAAA 354180 ||||| || || | | || || | |||||||||| ||| ||| ||| ||| Sbjct 14510 ACCGCCGGACAGACCACGCATGCGCGAGTGGGTACCGAACTCGGCG-TTC-AGGCCGAAG 14567 Query 354181 TGGTCGAGATGTTTCTGTAC 354200 | ||| || || ||||| || Sbjct 14568 TTGTCCAGGTGCTTCTGCAC 14587 >seq4743 Length=8801 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 410481 TTATGTGCCCGCG--TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGG 410538 |||||||| |||| || ||||||||||||||| |||||||| ||||||| ||||||| Sbjct 163 TTATGTGCGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGG 222 Query 410539 GTTCGAGTCCCG 410550 |||||||||||| Sbjct 223 GTTCGAGTCCCG 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471665173509971