Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_022330.1 Length=76586 Score E Sequences producing significant alignments: (Bits) Value seq5317 206 1e-48 >seq5317 Length=6148 Score = 206 bits (228), Expect = 1e-48 Identities = 403/591 (68%), Gaps = 11/591 (2%) Strand=Plus/Plus Query 66191 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCAC-GC 66249 || |||||||| ||||||||||| || || || ||| |||| ||| || || Sbjct 1575 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACAACGCTGGCGCTGAGTTGC 1634 Query 66250 GGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCT 66309 || ||| || |||||| | || || | | |||| ||||||||| ||||| || | Sbjct 1635 ATTGCTCAA-GCTCAGAAGACTGGCGGGACCTGTGCCTTCATCGACGCAGAGCATGCCAT 1693 Query 66310 GGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCC 66369 ||| || | ||||||||||| || ||||| ||| | ||| ||| || ||||| Sbjct 1694 TGACGCCCACTACGCCAAGGCTCTTGGTGTCGACATTGACGCGCTCTACGTCTCGCAGCC 1753 Query 66370 GGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC 66429 |||| | ||||| | || |||||||||| ||| ||| ||| ||| || | || Sbjct 1754 GGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGGGCAGTGGA 1813 Query 66430 CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACAT 66489 | |||| || | ||| ||||||||| |||||||||||||| ||||| ||||| || || Sbjct 1814 CCTCGTGGTGCTGGACAGTGTGGCGGCTCTGGTGCCGCGCGCGGAGCTGGAAGGTGAAAT 1873 Query 66490 CGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCAC 66549 || ||| || | | ||||| |||||||||||| ||||| |||| ||||| || Sbjct 1874 GGGAGACCAGCAGATTGCGCTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGGAAGCTGAC 1933 Query 66550 TGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAA 66606 || | | |||| |||| ||| | | ||| | ||||| | ||| |||| Sbjct 1934 GGGATCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAAATCCGCCAGAA 1990 Query 66607 GATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTT 66666 | | |||| | | || ||| | |||| || |||| || | ||| || | | Sbjct 1991 GGTGGGCATCAT---CTTCGGATCTCCTGAGGTGACGTCGGGTGGCACGGCGCTGCGTTA 2047 Query 66667 CTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGC 66726 |||||| || || || |||| | ||||||| | || ||||| ||||| ||| Sbjct 2048 CTACGCGTCTGTGCGGCTGGACATTCGTCGCAAGACGGCCATCAAGGAGGGCGACCAGGT 2107 Query 66727 TGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 66777 |||||||||| ||| |||||| || | |||||||||||||||| |||| Sbjct 2108 TGTCGGCAACGAGACCGTGGTGAAGGTGGCCAAGAACAAGCTGGCCTCGCC 2158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244926269553361