Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5227 132 3e-26 seq5738 129 4e-25 seq5736 127 1e-24 seq3557 100 2e-16 >seq5227 Length=11794 Score = 132 bits (146), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 2314 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 2315 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 2373 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 2374 ACAAAGATCTGCATGAT 2390 >seq5738 Length=44011 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 34726 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 34667 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 34666 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC 34607 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || || | || ||||| Sbjct 34606 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 34547 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || ||||| || |||||||||||| Sbjct 34546 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 34513 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 34498 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 34439 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 34438 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC 34379 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || || | || ||||| Sbjct 34378 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 34319 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || ||||| || ||||||||||| Sbjct 34318 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34286 >seq5736 Length=80658 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 56827 CAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 56768 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 56767 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 56708 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | ||||| || | ||| || || | || || || Sbjct 56707 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 56648 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || |||||||| || ||||||||||| Sbjct 56647 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56615 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 57054 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 56995 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 56994 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 56935 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | ||||| || | ||| || || | || || ||| Sbjct 56934 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 56875 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || |||||||| || |||||||||||| Sbjct 56874 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 56842 >seq3557 Length=22309 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| || |||| | || Sbjct 8048 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 7989 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 7988 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 7951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325660715493377