Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq5738 82.4 6e-11
>seq5738
Length=44011
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| || || ||||| || | || ||||| ||||| || |||| |||| |
Sbjct 34283 AAGATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 34342
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|| | ||| | | || || || |||||| || || || || | || ||
Sbjct 34343 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGAC 34402
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| | || || | || || || ||||||||||||| | || || ||||||
Sbjct 34403 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 34462
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| || |||||||| ||| ||||| ||||| || | |||| || ||
Sbjct 34463 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 34512
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || | || ||||| ||||| || |||| |||| |
Sbjct 34514 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 34573
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| | ||| | | || || || |||||| || || || || | || || |||
Sbjct 34574 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 34633
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||||||||||| | || || |||||||||
Sbjct 34634 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 34693
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785
|| || |||||||| ||| ||||| ||||| || | |||| || || ||
Sbjct 34694 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGCAA 34743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398837506023187
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |