Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 3e-14 seq5738 93.3 1e-13 seq5736 93.3 1e-13 >seq21 Length=30282 Score = 95.1 bits (104), Expect = 3e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||||| || ||| || || ||| ||| | | Sbjct 3364 GCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC 3305 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | || | | ||| | ||| || || ||||| | ||||| Sbjct 3304 CACAGCTGCTGCGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAA 3245 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 ||| || || |||| || | |||| || || || ||||| || || || || Sbjct 3244 AGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAAC 3185 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 |||||||| || |||| || ||| |||||||||||||| || |||| ||| | |||| Sbjct 3184 AGACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCG 3125 Query 173347 TAGAACA 173353 ||||||| Sbjct 3124 TAGAACA 3118 >seq5738 Length=44011 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || || ||||| | || ||||| || ||| Sbjct 34289 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 34348 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || || || || ||| ||| || Sbjct 34349 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 34408 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 34409 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 34468 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 34469 CAGAAGGAGTCGACGCTGCACCTGGT 34494 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || || ||||| | || ||||| || ||| Sbjct 34517 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 34576 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || || || || ||| ||| || Sbjct 34577 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 34636 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 34637 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 34696 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 34697 CAGAAGGAGTCGACGCTGCACCTGGT 34722 >seq5736 Length=80658 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 56630 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 56689 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || || || || ||| ||| || | || |||||| Sbjct 56690 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 56749 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || || ||| |||||| ||||||| ||||| Sbjct 56750 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 56809 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 56810 ACTCTCCACCTGGT 56823 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 56858 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 56917 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || || || || ||| ||| || | || |||||| Sbjct 56918 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 56977 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || || ||| |||||| ||||||| ||||| Sbjct 56978 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 57037 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 57038 ACTCTCCACCTGGT 57051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181698406575443