Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq21 95.1 3e-14
seq5738 93.3 1e-13
seq5736 93.3 1e-13
>seq21
Length=30282
Score = 95.1 bits (104), Expect = 3e-14
Identities = 169/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166
||||||||||||| |||||||||| || ||| || || ||| ||| | |
Sbjct 3364 GCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC 3305
Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226
|| || | || || || | || | | ||| | ||| || || ||||| | |||||
Sbjct 3304 CACAGCTGCTGCGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAA 3245
Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286
||| || || |||| || | |||| || || || ||||| || || || ||
Sbjct 3244 AGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAAC 3185
Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346
|||||||| || |||| || ||| |||||||||||||| || |||| ||| | ||||
Sbjct 3184 AGACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCG 3125
Query 173347 TAGAACA 173353
|||||||
Sbjct 3124 TAGAACA 3118
>seq5738
Length=44011
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| ||||| || || || || ||||| | || ||||| || |||
Sbjct 34289 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 34348
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
| |||| || ||||| |||||||| || || || || || ||| ||| ||
Sbjct 34349 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 34408
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||||||||| |||||| |||| || || | || || ||| |||||| ||
Sbjct 34409 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 34468
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || || ||||| ||
Sbjct 34469 CAGAAGGAGTCGACGCTGCACCTGGT 34494
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| ||||| || || || || ||||| | || ||||| || |||
Sbjct 34517 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 34576
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
| |||| || ||||| |||||||| || || || || || ||| ||| ||
Sbjct 34577 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 34636
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||||||||| |||||| |||| || || | || || ||| |||||| ||
Sbjct 34637 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 34696
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || || ||||| ||
Sbjct 34697 CAGAAGGAGTCGACGCTGCACCTGGT 34722
>seq5736
Length=80658
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || |||||||| |||| ||||| || ||| | ||||
Sbjct 56630 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 56689
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||||||||||| || || || || || || ||| ||| || | || ||||||
Sbjct 56690 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 56749
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| | || || || | || || ||| |||||| ||||||| |||||
Sbjct 56750 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 56809
Query 206365 ACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 56810 ACTCTCCACCTGGT 56823
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || |||||||| |||| ||||| || ||| | ||||
Sbjct 56858 AAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 56917
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||||||||||| || || || || || || ||| ||| || | || ||||||
Sbjct 56918 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 56977
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| | || || || | || || ||| |||||| ||||||| |||||
Sbjct 56978 GCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 57037
Query 206365 ACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 57038 ACTCTCCACCTGGT 57051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181698406575443
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |