Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 224 9e-54 seq5736 104 2e-17 seq5738 95.1 1e-14 >seq21 Length=30282 Score = 224 bits (248), Expect = 9e-54 Identities = 976/1524 (64%), Gaps = 40/1524 (3%) Strand=Plus/Minus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 |||||||| |||||||| || | | |||| ||| ||| | ||||| | ||||| Sbjct 4036 AACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCG 3977 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || ||||| | || |||||||| | || || |||||| ||||||| || || || Sbjct 3976 TTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAGCGAGTTG 3917 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACAT---CGACGAG 147081 ||||| |||| | | ||| ||||||| | ||||| ||||| |||||| Sbjct 3916 CGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCACAGGCCCGACGAC 3857 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAAC 147141 || || ||| |||||||||| |||||| | || ||||| || ||| |||| Sbjct 3856 GGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCGGCGAGCCCTGGAAC 3797 Query 147142 GTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTAT 147201 || ||| ||| || || | || | | ||| | || ||||||| Sbjct 3796 GTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTCCATAGCCGCATAGTAG 3737 Query 147202 ATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGC 147261 ||||| ||| ||| | ||||| || || || || ||||||||| | | | | Sbjct 3736 ATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCTCTCGAACGCGAAGTTC 3677 Query 147262 AGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCG 147321 | || | || || || || | ||||||| |||| |||||| || || || || Sbjct 3676 ATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGG----CG 3621 Query 147322 T-TGCTGCGCTT-CGCGC-TCG-CTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAG 147377 || || ||| ||||| ||| | | ||| |||| |||| || || | |||||| || Sbjct 3620 CATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAG 3561 Query 147378 GTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC 147437 ||| ||| | || || || | | ||| |||| | | || | || || || Sbjct 3560 GTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTCGAACACGCCCTCCTC 3501 Query 147438 GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC 147497 ||| || |||| || || | || ||||| ||||| |||||| ||| |||| Sbjct 3500 CACAA--AC---TTGGG-CAGCGCCACCGAGGCCAGGTTGCACACGGCCACCTCGTCGGG 3447 Query 147498 GTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTG 147557 | |||||| || | ||| ||||| ||||||| | || || | || || Sbjct 3446 GGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTG 3387 Query 147558 CTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 147617 ||| || ||||| ||| |||||| ||| |||||||| | || |||| ||||||| Sbjct 3386 CTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAGGGCACGCCCGTCTCGAT 3327 Query 147618 TTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCG 147674 |||| || | ||| |||| ||| | |||||| | | || || ||| Sbjct 3326 CTGCGCGTCCAGGATGGCGAACCA---CAGCTGCTGCGCGTTGATCGTCTTGCGCGCGCG 3270 Query 147675 GCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 ||||| || |||||| || || | ||||||||| ||||| |||| ||| || Sbjct 3269 TCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCCCCAGCACTCGTAGAG 3210 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCAT 147794 || || | || || || | ||| |||| || | | || | || | ||| Sbjct 3209 TCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGCCTCCACCCTCTTCAT 3150 Query 147795 AAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGC 147851 |||||||| ||||||||||||||||| | || |||||||| |||| || | | | Sbjct 3149 GAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGCTCGTTGCC 3090 Query 147852 GCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGT 147910 | | ||||| || | || | | | | | | ||| ||||||||||| |||| || Sbjct 3089 GTGGTTCTTGCG---CAGGTCCAGGAACTCGA-ACACGTCCGCGTGCCAGGGCTCAAGGT 3034 Query 147911 AGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGT 147967 ||| ||| | || || || ||||| |||||||||||| || | ||| || ||| || Sbjct 3033 AGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGCGGGCCGTGTCGT 2974 Query 147968 TAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGC 148027 | |||||||||| |||||| | ||| | | | |||||| ||| | ||| | || Sbjct 2973 TGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCACGGATGTAGC 2914 Query 148028 TGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGG 148087 | ||| || | | ||||| | | | ||| || || ||| | |||| || ||| Sbjct 2913 TATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCGGCCCACTTGGAGATGC 2854 Query 148088 CAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAA 148144 ||||| | || | |||||| ||||||| || ||| ||||| | | | | | Sbjct 2853 ACGCGCACT-GCTTGAGCGTGTCGT--AGATGCCCTCAATGGAGTCGTCCTGCATGGCCA 2797 Query 148145 GCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCG 148204 || || || || ||| ||| || | |||| || || || || || || ||| Sbjct 2796 ACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTGTCGGGGTCG 2737 Query 148205 CGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGT 148264 ||||||| || || ||||| ||| | |||||||| | ||| | | |||||| Sbjct 2736 CGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGGCCTTAATGTCGC 2677 Query 148265 CGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGAT 148324 ||| ||||||||||| |||||||| | ||| ||||| || || || | || | Sbjct 2676 TCTTGTGGATGCCCAGCGCCACGCGCATAATCATCTGCTGCGGGCGCTCCACCACCTTGC 2617 Query 148325 TGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAA 148384 ||| | || || || || ||||| || ||| | |||||||| | ||| || | Sbjct 2616 CGTTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGA 2557 Query 148385 AATCTAGCTCGTAAGCGATGGCCG 148408 | || | |||| |||||||| Sbjct 2556 AGTCGCGGTCGTGGATGATGGCCG 2533 >seq5736 Length=80658 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 56836 ACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 56777 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| |||||||| || || || || ||||| Sbjct 56776 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 56717 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||||| || | | || | | || | ||||||||| || | Sbjct 56716 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 56657 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || |||||||| || || | ||| |||||||| Sbjct 56656 CGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56615 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || |||||||| || |||| Sbjct 57036 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 56977 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || ||||| || | Sbjct 56976 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACG 56917 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || |||||||| || || Sbjct 56916 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTC 56857 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 56856 ACGAAGATCTGCATG 56842 >seq5738 Length=44011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 34734 CGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 34675 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| || ||||| || || || || || || Sbjct 34674 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCC 34615 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||| || || |||| | || | | || | ||||||||| |||| | Sbjct 34614 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGC 34555 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 34554 GTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 34513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 34506 CGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 34447 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| || ||||| || || || || || || Sbjct 34446 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCC 34387 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||| || || |||| | || | | || | ||||||||| |||| | Sbjct 34386 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGC 34327 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| || || | ||| |||||||| Sbjct 34326 GTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476563044395880