Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq21 145 8e-30 seq5736 138 1e-27 seq5738 134 1e-26 seq5227 113 5e-20 >seq21 Length=30282 Score = 145 bits (160), Expect = 8e-30 Identities = 352/524 (67%), Gaps = 17/524 (3%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||||||| ||||||| ||| |||||| | |||||| | Sbjct 2637 CAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGCCCTC 2696 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTT---ACGCACGCTTCGCCCACCATGTTT 7680 || |||||| | | ||||| | || ||||| |||||||| | || || ||||| Sbjct 2697 GAGACGTACGAGCTCATGTC---GCAAAAGTTTTTCACGCACGCGACCCCGACACTGTTT 2753 Query 7681 GCCGCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739 ||| ||||| |||| || ||| |||| || || || || | |||||| || || Sbjct 2754 AACGCCGGCAC-GCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGA 2812 Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799 | ||| || ||||| ||| ||||||| | ||||| || ||||| | | ||| Sbjct 2813 CTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGG 2872 Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCAT-CGTGTCCACCA 7858 || || || | | | | || || | ||||||| |||| ||| |||| ||| | Sbjct 2873 GGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTACATCCGTG-GCACGA 2931 Query 7859 ACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATG 7918 |||| ||| || | |||||| ||||||||||||| || ||| || | | Sbjct 2932 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACG 2991 Query 7919 TAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACG 7975 | |||||||| ||| |||||||| ||| | |||||||| | ||||| ||||||| Sbjct 2992 TGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACG 3051 Query 7976 CGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGC 8033 ||||| | | || | || | ||||| ||| || ||| | ||| || Sbjct 3052 CGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA--GCTGCACCGCGC 3109 Query 8034 GCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 |||||| || |||| || ||||||||||||||||||| |||| Sbjct 3110 GCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGA 3153 >seq5736 Length=80658 Score = 138 bits (152), Expect = 1e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||||| | ||| | Sbjct 56832 AGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 56773 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||| || ||||| ||||| || Sbjct 56772 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 56713 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||||| ||||| ||| | | ||| |||| |||||||| || || Sbjct 56712 TTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 56653 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 || || || || || | || || ||||| || ||||| || || Sbjct 56652 ATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTTCTT 56609 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| || || || ||||| || |||||||||||| Sbjct 57072 TTTCCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 57013 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| |||||||| ||||| || || |||| ||||||||| || ||| Sbjct 57012 CTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 56953 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || ||||| ||||| ||| | | ||| |||| ||| Sbjct 56952 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 56893 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || | || || ||||| || ||||| Sbjct 56892 ACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843 >seq5738 Length=44011 Score = 134 bits (148), Expect = 1e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 34503 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 34444 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || ||||| || || || Sbjct 34443 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCC 34384 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| || Sbjct 34383 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 34324 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || ||||| || ||||| ||| Sbjct 34323 ATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTTG 34282 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || || | || |||| ||| ||||| ||||| || ||||| || ||||||||||| Sbjct 34744 CTTGCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 34685 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || | ||| | ||| || ||||| ||||| || || |||| |||||||| || || Sbjct 34684 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 34625 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| || || || || || ||||| || || || || ||| | | ||| |||| || Sbjct 34624 CGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 34565 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||| || ||||| || || || | || || ||||| || ||||| Sbjct 34564 CACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514 >seq5227 Length=11794 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2317 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 2318 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2376 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 2377 AAGATCTGCAT 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505347335809160