Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq21 145 8e-30
seq5736 138 1e-27
seq5738 134 1e-26
seq5227 113 5e-20
>seq21
Length=30282
Score = 145 bits (160), Expect = 8e-30
Identities = 352/524 (67%), Gaps = 17/524 (3%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| || ||| | ||||||||||| ||||||| ||| |||||| | |||||| |
Sbjct 2637 CAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGCCCTC 2696
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTT---ACGCACGCTTCGCCCACCATGTTT 7680
|| |||||| | | ||||| | || ||||| |||||||| | || || |||||
Sbjct 2697 GAGACGTACGAGCTCATGTC---GCAAAAGTTTTTCACGCACGCGACCCCGACACTGTTT 2753
Query 7681 GCCGCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739
||| ||||| |||| || ||| |||| || || || || | |||||| || ||
Sbjct 2754 AACGCCGGCAC-GCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGA 2812
Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799
| ||| || ||||| ||| ||||||| | ||||| || ||||| | | |||
Sbjct 2813 CTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGG 2872
Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCAT-CGTGTCCACCA 7858
|| || || | | | | || || | ||||||| |||| ||| |||| ||| |
Sbjct 2873 GGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTACATCCGTG-GCACGA 2931
Query 7859 ACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATG 7918
|||| ||| || | |||||| ||||||||||||| || ||| || | |
Sbjct 2932 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACG 2991
Query 7919 TAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACG 7975
| |||||||| ||| |||||||| ||| | |||||||| | ||||| |||||||
Sbjct 2992 TGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACG 3051
Query 7976 CGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA--AAGC 8033
||||| | | || | || | ||||| ||| || ||| | ||| ||
Sbjct 3052 CGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA--GCTGCACCGCGC 3109
Query 8034 GCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077
|||||| || |||| || ||||||||||||||||||| ||||
Sbjct 3110 GCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGA 3153
>seq5736
Length=80658
Score = 138 bits (152), Expect = 1e-27
Identities = 165/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| || || || ||||| || ||||||||||||| | ||| |
Sbjct 56832 AGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 56773
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| ||||| || || |||| ||||||||| || ||||| ||||| ||
Sbjct 56772 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 56713
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || ||||| ||||| ||| | | ||| |||| |||||||| || ||
Sbjct 56712 TTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 56653
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719
|| || || || || | || || ||||| || ||||| || ||
Sbjct 56652 ATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTTCTT 56609
Score = 136 bits (150), Expect = 4e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543
||||| || | || || | ||| ||||| || || || ||||| || ||||||||||||
Sbjct 57072 TTTCCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 57013
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
| | ||| | ||| |||||||| ||||| || || |||| ||||||||| || |||
Sbjct 57012 CTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 56953
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| ||||| || || || || || ||||| ||||| ||| | | ||| |||| |||
Sbjct 56952 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 56893
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || || || || || | || || ||||| || |||||
Sbjct 56892 ACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843
>seq5738
Length=44011
Score = 134 bits (148), Expect = 1e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| |
Sbjct 34503 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 34444
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| ||||| || || |||| |||||||| || ||||| || || ||
Sbjct 34443 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCC 34384
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || || || || ||| | | ||| |||| ||||||||||| ||
Sbjct 34383 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTG 34324
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | || || ||||| || ||||| |||
Sbjct 34323 ATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTTG 34282
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542
||| || || | || |||| ||| ||||| ||||| || ||||| || |||||||||||
Sbjct 34744 CTTGCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 34685
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
|| | ||| | ||| || ||||| ||||| || || |||| |||||||| || ||
Sbjct 34684 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 34625
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
||| || || || || || ||||| || || || || ||| | | ||| |||| ||
Sbjct 34624 CGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTC 34565
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||||||| || ||||| || || || | || || ||||| || |||||
Sbjct 34564 CACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514
>seq5227
Length=11794
Score = 113 bits (124), Expect = 5e-20
Identities = 141/191 (74%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || ||||||||||| | ||| | ||| |||||||| ||||| || || |
Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| |||||||| || ||||| ||||| || || || || ||||| || ||||| ||
Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2317
Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702
||||| ||||||||| |||||||| || || ||||| || || || | || || ||
Sbjct 2318 -CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2376
Query 134703 AAAATTTGCAT 134713
|| || |||||
Sbjct 2377 AAGATCTGCAT 2387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505347335809160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |