Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2518 102 1e-16 >seq2518 Length=24447 Score = 102 bits (112), Expect = 1e-16 Identities = 364/562 (65%), Gaps = 9/562 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||||||||| || | ||||||||| | || || | ||||| || | Sbjct 23502 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 23443 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| || || ||||| |||||||| || |||| |||| || || || Sbjct 23442 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 23384 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-TATC 39786 || ||||||||||| || || || || || || | || | ||| ||| | | | Sbjct 23383 GAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 23324 Query 39787 ATTATGT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || |||||| | ||||| | ||||||||||| || || || || || || Sbjct 23323 CGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCA 23264 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || || | || | | || || | || || | || || || || | ||| Sbjct 23263 ATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGC 23204 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||| || || |||||||| || || || ||||| || ||||| || || | || Sbjct 23203 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCC 23144 Query 39965 TCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 || | | || ||||| || || || | |||| || || ||||| || || | Sbjct 23143 TCCGGCACCTGCACCTCATTGCTGAAGTTCAT--GGCCAGGTTCTCGTTCACGATGCCGT 23086 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 | || || || || || |||| || || || || || | || | | |||| | Sbjct 23085 CGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGT 23026 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||| |||| || | | || | || || || ||||| |||||||||| Sbjct 23025 TCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCT 22966 Query 40143 CTGCCTTTTTGTACATGTTCCA 40164 | ||||| |||||||| | ||| Sbjct 22965 CCGCCTTCTTGTACATCTGCCA 22944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686839396452120