Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21 188 9e-43 seq2518 104 3e-17 >seq21 Length=30282 Score = 188 bits (208), Expect = 9e-43 Identities = 515/777 (66%), Gaps = 15/777 (2%) Strand=Plus/Minus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| |||| |||| ||| ||||||||||||||| || Sbjct 3403 ATCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAG 3344 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACA 111436 ||| |||||||| |||| | | || || || ||| || | || || || | Sbjct 3343 GGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGA 3286 Query 111437 ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 | | ||| || ||||||||| |||||||||| || |||| ||||||||||| Sbjct 3285 TCGTC-TTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCG 3227 Query 111494 CCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | || ||| |||| || || || | | || ||||| ||| ||| | ||| Sbjct 3226 CCC-CAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATT 3168 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TAC 111611 |||| |||| ||||||||| || || || | |||||| | | || || || | | Sbjct 3167 GGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGC 3108 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 | | || | |||| || ||||| || | || |||||||| | | ||||||| Sbjct 3107 GCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGT 3049 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 111728 |||| |||||||| |||| |||| || ||||| || | || | || | || | Sbjct 3048 GCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGT 2989 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 |||| || ||| |||| || ||||| ||||| || || || |||| || || || | Sbjct 2988 AGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCG 2929 Query 111789 TCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 | || || || || | || |||| | | | || ||| || || |||||||| Sbjct 2928 TGCCACGGAT-GTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCG 2870 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 |||||||| ||||| ||| |||| | | || || | ||||| || | || ||||| Sbjct 2869 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCG 2810 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967 |||| |||| | |||||||| |||| || || | || || || || || || Sbjct 2809 TCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAC 2750 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 112027 || || || || ||||| |||| | ||| ||||| ||||| ||||| | | | Sbjct 2749 AGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCG 2690 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | | |||||| | ||||||||| | || || ||||| | ||| | ||| ||| Sbjct 2689 GCCTTAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCATCTGCTGCGGG 2633 >seq2518 Length=24447 Score = 104 bits (114), Expect = 3e-17 Identities = 289/434 (67%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 23779 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 23720 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||||||||| | || | ||| |||| | || || || || Sbjct 23719 CAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTAC-AGCAGGCG 23661 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||||||||||| | ||||| | |||||||| ||||| || | || Sbjct 23660 GTCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAGCTCCAC 23601 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | || || | ||| | |||| | | ||| || || || || | |||||| ||| Sbjct 23600 A-GGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGATCTCGT 23542 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| || ||| || Sbjct 23541 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CA-GGCGAAG 23486 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | |||||||| ||| || || || || ||||||| ||||| ||||| Sbjct 23485 TCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATC 23426 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||| | ||| | || | |||||| || || ||||||||||| |||||| Sbjct 23425 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 23366 Query 122785 ACACACGCAAACGC 122798 ||| || ||||| Sbjct 23365 ACAGCAGCGAACGC 23352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627968545216800