Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq21 251 9e-62
seq544 167 3e-36
seq2518 158 1e-33
>seq21
Length=30282
Score = 251 bits (278), Expect = 9e-62
Identities = 1098/1723 (64%), Gaps = 32/1723 (2%)
Strand=Plus/Minus
Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901
||||||||| || ||||||||||||| ||||||||| || | ||||| || | | |||
Sbjct 4349 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGTGAGCTT 4290
Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961
| || ||| || | ||| || ||| | ||| || ||| || ||
Sbjct 4289 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATGTAGGCGCC 4230
Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021
|| || |||| || || | ||| ||||| ||||| |||||||| ||| ||||
Sbjct 4229 GCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTTGTACTT 4170
Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081
| ||| | | || ||||| || || || || | ||| || | | || | ||
Sbjct 4169 CTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGCCGCTGTCATTCAGGAT 4110
Query 118082 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 118141
| | || || | ||||| || | || | || |||| || || | |||
Sbjct 4109 CTGGTTGCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTT 4050
Query 118142 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 118201
||||| | ||||| || || || ||| | || || |||| |||||| ||
Sbjct 4049 GTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGG 3990
Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 118261
||| | | |||| ||||| || | ||| ||||| || ||||| ||||||||||| ||||
Sbjct 3989 CTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCAC 3930
Query 118262 GAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CG 118319
|| || ||| || || || | | | | | ||||| || || |||||| |
Sbjct 3929 CAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCA 3870
Query 118320 TAGTTGAG----CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGC 118375
|| | | || | ||| ||||| || ||||||| ||| || | | ||
Sbjct 3869 CAGGCCCGACGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATGCCCTTGCTGGC 3813
Query 118376 TGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTC 118435
||||| |||| || ||||| || ||||| ||| || | || | || |||
Sbjct 3812 CGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTC 3753
Query 118436 GAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA 118495
| || || | || || || || || || || | | |||||| |||
Sbjct 3752 CATAGCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCT 3693
Query 118496 ATCAAACGCGA-GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553
|| ||||||| || || | || || | |||||||| || ||||| |||| |||
Sbjct 3692 CTCGAACGCGAAGTT--CATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCG 3635
Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 118613
|| ||||| || | ||| || ||||| || || ||||||| || | || |||
Sbjct 3634 ATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCG 3575
Query 118614 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 118673
|| ||| | || || || |||| ||||| |||| || | ||||| | ||| ||
Sbjct 3574 ATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTCG 3515
Query 118674 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 118733
|| || ||| || ||| |||| || || || | || ||||| || |||||
Sbjct 3514 AACACGCC---CTCCTCC---ACAAACTTGGGCAGCGCCACCGAGGCCAGGTTGCACACG 3461
Query 118734 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAA 118791
| ||| || |||||||| || | || ||||||||| || | |
Sbjct 3460 GCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGG--A 3403
Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851
| ||||| | ||||| || || ||||| ||| ||| |||||||| |||||| | |
Sbjct 3402 TCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAGG 3343
Query 118852 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAG 118911
|| |||||||| | || | | || || || ||| || | || || | |
Sbjct 3342 GCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGAT 3285
Query 118912 TGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969
| | | || ||| ||||| | |||||||||| || |||| |||||||| || ||
Sbjct 3284 CGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCC 3225
Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 119029
| | ||| |||| || || || | || |||||||| ||| ||| | ||| |
Sbjct 3224 CCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGC 3165
Query 119030 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG 119089
||| |||| ||||||||| || || || | ||| ||||| |||| || || || |||
Sbjct 3164 CTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCG 3105
Query 119090 A-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148
|| || | | || || || |||| |||| || || | | ||||||||||
Sbjct 3104 GTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGTGCC 3046
Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205
| || || ||||| | |||| || ||||| || | || |||||| || || |
Sbjct 3045 AGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGC 2986
Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265
|| ||| |||| || || || ||||| || ||||| |||| ||| ||| || || |
Sbjct 2985 GGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGC 2926
Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325
| || || || |||| | || | ||| ||| || || |||||||| ||||
Sbjct 2925 CACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCGGCCC 2866
Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385
|||| ||||| |||||||| | |||| || ||||||| || || || ||||| |||
Sbjct 2865 ACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCT 2806
Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445
| || | ||||||||| ||||| ||| || | || || || ||||| || || |
Sbjct 2805 GCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTG 2746
Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505
| || |||||||| |||| | ||| ||||| ||||| ||||| | | ||||
Sbjct 2745 TCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGGCCT 2686
Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548
|||||| | ||| || || | || || ||||||| |||
Sbjct 2685 TAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 2643
>seq544
Length=17931
Score = 167 bits (184), Expect = 3e-36
Identities = 540/819 (66%), Gaps = 32/819 (4%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || || ||||||||||||||||| ||||| || | || ||| | |||||
Sbjct 6728 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 6787
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCT--GGCACTCCAATCTGTTTGAGGAGAC 129845
| || || |||||||| ||| | | ||| ||||| || | | | || || |
Sbjct 6788 CAGTCGAAGGGGTTCTTGACGTTGTAGA--GCTTGGGCACGCCCAGCGAGTACAGCAGGC 6845
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| || | ||| |||| ||||||| |||| | |||||||| |||||||| | |
Sbjct 6846 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTC-C 6904
Query 129906 ATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964
| ||| |||| ||| | | |||| | | ||| ||| || || || || ||||| ||
Sbjct 6905 ACGGGCAGCGAGTCGCACACGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCG 6964
Query 129965 TGAATG-GTCTC-CGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGG 130016
|| | | | ||| || | | || | ||| || |||| |||| | ||||
Sbjct 6965 TGCACGCGGCTCTCGGG--AAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCACG- 7016
Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076
| || ||| ||| | |||||||| ||| |||||| || || ||||||| ||| || |
Sbjct 7017 CGAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGG 7076
Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136
||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| |
Sbjct 7077 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGC 7136
Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA-CTTTGTATCAAAC 130195
| || || |||||||| | |||||||| | | || || | | | || ||
Sbjct 7137 CTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCAC 7195
Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255
||||| | |||||| |||||||| |||| || ||||||| |||| || || ||
Sbjct 7196 CACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAAC 7255
Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 130315
|| | ||||| || | ||| ||||||||| | || ||||| || || |||
Sbjct 7256 AGGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCG 7315
Query 130316 CCATGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373
| |||| ||| ||||| ||| | ||||||| ||||||| ||| | ||
Sbjct 7316 GCGTGGA--TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCT 7373
Query 130374 GTACCTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGC 130431
| || || | ||| || | | || | | ||||| || || || ||| | | ||
Sbjct 7374 GCACTTCGT-TGCTGAAGT-TCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTCGCCGC 7431
Query 130432 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTC 130491
|| || ||||| | | ||| ||||| | | || || || |||| ||| ||||||
Sbjct 7432 GAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGCTTCTGCCAGTC 7491
Query 130492 GTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|| || || | | || || | |||||| || |||||
Sbjct 7492 GTTCAGGTCGTGCACCAGGTCCAACTCCTCGGCCGTCCA 7530
>seq2518
Length=24447
Score = 158 bits (174), Expect = 1e-33
Identities = 359/531 (68%), Gaps = 18/531 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || || ||||||||||||||||| ||||| || | || ||| | |||||
Sbjct 23779 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 23720
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847
| || || |||||||| | ||| | || | ||| || | | | || || ||
Sbjct 23719 CAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTACAGCAGGCGG 23660
Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906
|| | ||| |||||||||||| ||||| | |||||||| ||||| || | |||
Sbjct 23659 TCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAGCTCCACA 23600
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || | ||| | |||| | | ||| ||| ||| || || ||||||| ||||
Sbjct 23599 -GGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGATCTCGTG 23541
Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019
| | | ||| | ||| | || || |||| |||| | || ||| |
Sbjct 23540 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCA-GGCGA 23488
Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079
| ||| ||| | ||||| || ||| ||| || || |||||||||| |||||| ||||
Sbjct 23487 AGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCA 23428
Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139
| || || |||||||| | |||||| || | || || ||||| ||||||||||| ||||
Sbjct 23427 TCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 23368
Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA-CTTTGTATCAAACCAC 130198
||||| |||||||| | |||||||| | | || || | | | || |||||
Sbjct 23367 CCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCACCAC 23309
Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 130249
|| | |||||| ||||| || |||| || ||||||| |||| || |||
Sbjct 23308 TTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCT 23258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618372714853480
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