Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq21 251 9e-62 seq544 167 3e-36 seq2518 158 1e-33 >seq21 Length=30282 Score = 251 bits (278), Expect = 9e-62 Identities = 1098/1723 (64%), Gaps = 32/1723 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||||||||||| ||||||||| || | ||||| || | | ||| Sbjct 4349 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGTGAGCTT 4290 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | || ||| || | ||| || ||| | ||| || ||| || || Sbjct 4289 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATGTAGGCGCC 4230 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || || |||| || || | ||| ||||| ||||| |||||||| ||| |||| Sbjct 4229 GCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTTGTACTT 4170 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | | || ||||| || || || || | ||| || | | || | || Sbjct 4169 CTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGCCGCTGTCATTCAGGAT 4110 Query 118082 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 118141 | | || || | ||||| || | || | || |||| || || | ||| Sbjct 4109 CTGGTTGCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTT 4050 Query 118142 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 118201 ||||| | ||||| || || || ||| | || || |||| |||||| || Sbjct 4049 GTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGG 3990 Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 118261 ||| | | |||| ||||| || | ||| ||||| || ||||| ||||||||||| |||| Sbjct 3989 CTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCAC 3930 Query 118262 GAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CG 118319 || || ||| || || || | | | | | ||||| || || |||||| | Sbjct 3929 CAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCA 3870 Query 118320 TAGTTGAG----CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGC 118375 || | | || | ||| ||||| || ||||||| ||| || | | || Sbjct 3869 CAGGCCCGACGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATGCCCTTGCTGGC 3813 Query 118376 TGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTC 118435 ||||| |||| || ||||| || ||||| ||| || | || | || ||| Sbjct 3812 CGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTC 3753 Query 118436 GAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA 118495 | || || | || || || || || || || | | |||||| ||| Sbjct 3752 CATAGCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCT 3693 Query 118496 ATCAAACGCGA-GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 || ||||||| || || | || || | |||||||| || ||||| |||| ||| Sbjct 3692 CTCGAACGCGAAGTT--CATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCG 3635 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 118613 || ||||| || | ||| || ||||| || || ||||||| || | || ||| Sbjct 3634 ATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCG 3575 Query 118614 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 118673 || ||| | || || || |||| ||||| |||| || | ||||| | ||| || Sbjct 3574 ATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTCG 3515 Query 118674 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 118733 || || ||| || ||| |||| || || || | || ||||| || ||||| Sbjct 3514 AACACGCC---CTCCTCC---ACAAACTTGGGCAGCGCCACCGAGGCCAGGTTGCACACG 3461 Query 118734 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAA 118791 | ||| || |||||||| || | || ||||||||| || | | Sbjct 3460 GCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGG--A 3403 Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851 | ||||| | ||||| || || ||||| ||| ||| |||||||| |||||| | | Sbjct 3402 TCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAGG 3343 Query 118852 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAG 118911 || |||||||| | || | | || || || ||| || | || || | | Sbjct 3342 GCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGAT 3285 Query 118912 TGGCGTTGGCTCGC--CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969 | | | || ||| ||||| | |||||||||| || |||| |||||||| || || Sbjct 3284 CGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCC 3225 Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 119029 | | ||| |||| || || || | || |||||||| ||| ||| | ||| | Sbjct 3224 CCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGC 3165 Query 119030 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG 119089 ||| |||| ||||||||| || || || | ||| ||||| |||| || || || ||| Sbjct 3164 CTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCG 3105 Query 119090 A-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 || || | | || || || |||| |||| || || | | |||||||||| Sbjct 3104 GTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGTGCC 3046 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205 | || || ||||| | |||| || ||||| || | || |||||| || || | Sbjct 3045 AGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGC 2986 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 || ||| |||| || || || ||||| || ||||| |||| ||| ||| || || | Sbjct 2985 GGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGC 2926 Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 | || || || |||| | || | ||| ||| || || |||||||| |||| Sbjct 2925 CACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCGGCCC 2866 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| |||||||| | |||| || ||||||| || || || ||||| ||| Sbjct 2865 ACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCT 2806 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | || | ||||||||| ||||| ||| || | || || || ||||| || || | Sbjct 2805 GCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTG 2746 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || |||||||| |||| | ||| ||||| ||||| ||||| | | |||| Sbjct 2745 TCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGGCCT 2686 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||||| | ||| || || | || || ||||||| ||| Sbjct 2685 TAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 2643 >seq544 Length=17931 Score = 167 bits (184), Expect = 3e-36 Identities = 540/819 (66%), Gaps = 32/819 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 6728 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 6787 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCT--GGCACTCCAATCTGTTTGAGGAGAC 129845 | || || |||||||| ||| | | ||| ||||| || | | | || || | Sbjct 6788 CAGTCGAAGGGGTTCTTGACGTTGTAGA--GCTTGGGCACGCCCAGCGAGTACAGCAGGC 6845 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| |||| | |||||||| |||||||| | | Sbjct 6846 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTC-C 6904 Query 129906 ATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | ||| |||| ||| | | |||| | | ||| ||| || || || || ||||| || Sbjct 6905 ACGGGCAGCGAGTCGCACACGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCG 6964 Query 129965 TGAATG-GTCTC-CGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGG 130016 || | | | ||| || | | || | ||| || |||| |||| | |||| Sbjct 6965 TGCACGCGGCTCTCGGG--AAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCACG- 7016 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 | || ||| ||| | |||||||| ||| |||||| || || ||||||| ||| || | Sbjct 7017 CGAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGG 7076 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 ||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| | Sbjct 7077 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGC 7136 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA-CTTTGTATCAAAC 130195 | || || |||||||| | |||||||| | | || || | | | || || Sbjct 7137 CTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCAC 7195 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||||| | |||||| |||||||| |||| || ||||||| |||| || || || Sbjct 7196 CACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAAC 7255 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 130315 || | ||||| || | ||| ||||||||| | || ||||| || || ||| Sbjct 7256 AGGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCG 7315 Query 130316 CCATGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373 | |||| ||| ||||| ||| | ||||||| ||||||| ||| | || Sbjct 7316 GCGTGGA--TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCT 7373 Query 130374 GTACCTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGC 130431 | || || | ||| || | | || | | ||||| || || || ||| | | || Sbjct 7374 GCACTTCGT-TGCTGAAGT-TCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTCGCCGC 7431 Query 130432 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTC 130491 || || ||||| | | ||| ||||| | | || || || |||| ||| |||||| Sbjct 7432 GAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGCTTCTGCCAGTC 7491 Query 130492 GTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 || || || | | || || | |||||| || ||||| Sbjct 7492 GTTCAGGTCGTGCACCAGGTCCAACTCCTCGGCCGTCCA 7530 >seq2518 Length=24447 Score = 158 bits (174), Expect = 1e-33 Identities = 359/531 (68%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 23779 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 23720 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| | ||| | || | ||| || | | | || || || Sbjct 23719 CAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTACAGCAGGCGG 23660 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| ||||| | |||||||| ||||| || | ||| Sbjct 23659 TCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAGCTCCACA 23600 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || | ||| | |||| | | ||| ||| ||| || || ||||||| |||| Sbjct 23599 -GGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGATCTCGTG 23541 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | || ||| | Sbjct 23540 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCA-GGCGA 23488 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | ||||| || ||| ||| || || |||||||||| |||||| |||| Sbjct 23487 AGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCA 23428 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 | || || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 23427 TCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 23368 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA-CTTTGTATCAAACCAC 130198 ||||| |||||||| | |||||||| | | || || | | | || ||||| Sbjct 23367 CCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCACCAC 23309 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 130249 || | |||||| ||||| || |||| || ||||||| |||| || ||| Sbjct 23308 TTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCT 23258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618372714853480