Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq21 214 2e-50 seq544 114 2e-20 seq2518 111 2e-19 seq3518 82.4 9e-11 seq2056 82.4 9e-11 >seq21 Length=30282 Score = 214 bits (236), Expect = 2e-50 Identities = 440/646 (68%), Gaps = 9/646 (1%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| | ||||||||||| | || || || | |||||| | | | Sbjct 2633 CCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGC 2692 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| ||||| ||||| ||| | |||| ||||| || || || || || Sbjct 2693 CCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACACTGTT 2752 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || || || || || | || ||| |||| |||||||| | |||| |||| || Sbjct 2753 TAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGA 2812 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | || ||||| | || || | | |||| ||| ||||| |||||||| || Sbjct 2813 CTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGG 2872 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 |||||| || || ||| || | | | |||| || | || || || || || | Sbjct 2873 GGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTAC-ATCCGTGGCACGA 2931 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || |||| || || || ||||| ||||| || |||| ||| || ||||| | Sbjct 2932 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACG 2991 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| || |||| |||| |||||||| ||||||| Sbjct 2992 TGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACG 3051 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695 |||| | | |||||||| || |||| ||||| || |||| | || | | || Sbjct 3052 CGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GCTGCACCGCGCG 3110 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 ||||| || |||| ||| || ||| | || ||||| ||||||||||| || |||| | | Sbjct 3111 CGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGCCAAT 3170 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 ||||| ||| ||| || || || | | || ||||| |||| ||| ||| | ||| || Sbjct 3171 GGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCCCCTGGACTCTACGAGTGCTG-GGGCGA 3229 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 ||||||||| ||||||| |||||||||| | || || || ||| Sbjct 3230 GGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAGGGACGCGCG 3275 >seq544 Length=17931 Score = 114 bits (126), Expect = 2e-20 Identities = 191/272 (70%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 94729 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 7299 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 7242 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 94788 | || | ||||| | | ||||| ||| | ||||| | ||||||| || | | Sbjct 7241 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 7182 Query 94789 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 7181 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 7126 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 7125 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 7066 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||||||| ||| || |||||||| Sbjct 7065 TTCTCCAACGAGCTCATCAGCCGCGACGAGGG 7034 >seq2518 Length=24447 Score = 111 bits (122), Expect = 2e-19 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | | |||||| | || || | |||||| | Sbjct 23208 CTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGAGCCATTGAG 23267 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--- 94788 || | ||||| | | ||||||||| | ||||| | ||||||| || | | Sbjct 23268 ACGATCCCGTGCGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTG 23327 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 23328 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTC 23383 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || || ||||| ||||| |||| Sbjct 23384 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTT 23443 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| || || ||||| Sbjct 23444 CTCGAACGAGCTGATCAGCCGCGATGAGGG 23473 >seq3518 Length=62287 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 169312 GAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTC-CCACGAAGAGGGAAGACAC 169370 |||||| | ||||| ||||| || |||||| ||| || || |||||||| || || | Sbjct 13077 GAGCTGCGCGACAGTTGCATCACGCACATTCA-ACAGTTTTCCGCGAAGAGGAAACACGC 13135 Query 169371 CGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCAC 169430 | || || || || ||||| || | || || || ||||| || | ||| || || |||| Sbjct 13136 CATACTGGTCCCGCCCAACAACTGCAAGTCCAGCCACTGCTAGTGCCTTAGCTGAATCAC 13195 Query 169431 CCTCGGTGACGATGAGCGTACATT 169454 ||||||| | ||| |||| |||| Sbjct 13196 CCTCGGTCAAGATAAGCGAGCATT 13219 >seq2056 Length=43087 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || |||||||| || ||||||| |||||| || | || ||| | ||||| | || | Sbjct 37470 GCGTCAATCTCGTCGATGAAGATGATGCACGGC-GCCTTCCGCTTGGCCGACT-CGAACA 37527 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || ||||| ||||| || ||||| |||||||| | || | | | | || Sbjct 37528 GGTCGCGCACACGTCGCGCGCCGACGCCAACGTACATCTCCTCGAACTCGGAGCCCGACG 37587 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| || | ||||| || ||||| |||||||| | |||||||||| Sbjct 37588 AGTAGAAGAAGGGCACGCCGGCCTCACCAGCGATGGCGCGGGCGAGCAACGTCTTACCCG 37647 Query 9882 TACCTGGC 9889 |||| ||| Sbjct 37648 TACCGGGC 37655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583201868786920