Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq524 120 9e-22 seq4459 95.1 4e-14 >seq524 Length=22410 Score = 120 bits (132), Expect = 9e-22 Identities = 664/1056 (63%), Gaps = 10/1056 (1%) Strand=Plus/Plus Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 |||| || ||||| ||||| || || ||||||| || || || || || || | Sbjct 11500 TTACGGTGCCAGCGTATTTCAACGACTCCCAGCGCCAAGCTACCAAGGACGCCGGTGCGA 11559 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | || ||| | || || || | || || ||||||||||| || || || ||||| || | Sbjct 11560 TCGCTGGGCTGAACGTCCTGCGTATCATCAATGAACCCACGGCCGCGGCCATTGCCTACG 11619 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | || || || || | | ||| | || | | || || ||| | || || || | Sbjct 11620 GCCTGGACAA---GAAGGGCGGGGAACACAACGTGTTGATCTTCGATCTGGGAGGCGGGA 11676 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 | |||||||| || || ||||| | ||||| || || || || || || || || || | Sbjct 11677 CGTTTGATGTGTCGCTCCTAACGATCGAAGAAGGCATCTTCGAGGTGAAGGCCACGGCCG 11736 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916 | || || || || || || || || || || || || || || | | || || ||| Sbjct 11737 GAGACACGCACCTGGGCGGCGAGGACTTCGACAACCGCCTGGTCGAGTACTTCGTGCAAG 11796 Query 349917 AATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 | || ||||| || | | ||| | | | || || | || ||||||||||| Sbjct 11797 AGTTCAAGCGCAAACATCGCAGAGATCTCAGTGTGAACTCTCGTGCGATGCGTCGCCTTC 11856 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || || || || || || |||||| | | || | | | ||| | | ||||| | Sbjct 11857 GTACAGCCTGCGAGCGCGCGAAGCGTACGCTGTCCACGTCGGCGCAAGCGTACATTGAGA 11916 Query 350037 TTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 | ||||| ||| | || |||| || ||| || | || || || || ||||| || Sbjct 11917 TCGATTC-GTTGTTGGACGGCACCGACTTCAACTCGACCATCACGCGCGCGCGGTTCGAG 11975 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 || | || | || | || | || |||||||| |||| | || | || Sbjct 11976 GACCTGTGCAACGAATTCTTCCGCAAGACGATGGATCCGGTGGCGCAGGTCCTGCGCGAC 12035 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 | || |||| || || ||| | | || || ||| | ||||| || || || ||||| Sbjct 12036 TCCAAGCTGTCGAAGAACCAGGTGAACGAGGTGGTTCTGGTTGGAGGCTCGACGCGTATC 12095 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAAT 350274 || || || || ||||| | || || || || ||||| || | ||| || || || Sbjct 12096 CCCAAGGTGCAGCAGTTGTTGATGGACTTCTTCAACGGCAAGGAGCTGTTCAAG-TCGAT 12154 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || || || || || || || || || | || ||||| |||| | ||| || Sbjct 12155 CAACCCGGACGAGGCCGTCGCGTACGGCGCGACGGTGCAGGCTGCTATCCTGAGTGGCAA 12214 Query 350335 TAA---GAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | | | || || || | || || | | || || || |||| || |||||||| Sbjct 12215 TGACTCGTCGTCCAAGCTTCAGGACCTGCTGTTGCTGGACGTGGCTCCGCTGTCGCTTGG 12274 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | || || | |||| ||| ||||| || ||||| | || | || | || | Sbjct 12275 CCTGGAGACGGCCGGTGGAGTCATGACGAAGCTCATTCCGCGTAACACAACGATCCCGTC 12334 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGT 350511 || ||| | || | || || || | || || || ||||| | || || ||||| Sbjct 12335 CAAGAAGACGCAGTCGTTCTCGACGTACGCGGACAACCAGCCTGGTGTGCTGATCCAAGT 12394 Query 350512 ATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG 350571 || || || || || | || || ||| || ||| || | || | || Sbjct 12395 GTTCGAGGGCGAGCGCACCATGACCCGCGACAATCATCTACTGGGCAAGTTCAATCTGGA 12454 Query 350572 TGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTC 350631 | || || || |||||| | || || || ||||| || || | ||||| ||||| Sbjct 12455 CGGCATCCCGCCCATGCCTCGCGGTGTCCCGCAGATCGATGTTACATTCGACGTTGATGT 12514 Query 350632 AAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 || ||||||||||| || | || || || || || Sbjct 12515 GAACGGTATTTTAAACGTGTCGGCCGTGGAGAAGTC 12550 >seq4459 Length=1573 Score = 95.1 bits (104), Expect = 4e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1366 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 1425 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1426 TCGGGCA 1432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515097475045649