Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6666 190 2e-43 seq4038 111 1e-19 >seq6666 Length=19192 Score = 190 bits (210), Expect = 2e-43 Identities = 452/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || || || |||| | ||| || ||||| || || || | |||| Sbjct 10622 AGCTGCTTCTGGAGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 10681 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | | ||| || || || |||| || ||| || | | |||| Sbjct 10682 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 10741 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 |||||||| || || || || || || |||||||| |||| | |||||| | |||||| Sbjct 10742 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAG 10801 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| ||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 10802 GACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATT 10861 Query 30104 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTT 30162 | || |||||||| || ||| | ||| || | ||| || || | || Sbjct 10862 TCATTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTG 10921 Query 30163 C----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | || || | || | ||| ||||| ||||| ||| || |||||| Sbjct 10922 CGCAGCTTGTGAATAACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCG 10975 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || || |||| ||||||||| ||||| || ||||| Sbjct 10976 GCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGGTCCG 11035 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30336 || || ||| |||| | | | | | || || | |||||| | | || | || || || Sbjct 11036 AGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATT 11094 Query 30337 GGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30396 | |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 11095 GCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGAT 11154 Query 30397 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||||||||||||||||||| | ||| | ||| || || | |||||||||||| || || Sbjct 11155 GAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGG 11214 Query 30457 AAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 30512 ||| |||||||| || | | ||| ||| | ||||| || |||| || | Sbjct 11215 GAACACGTTGTCCCTT-AGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTG 11273 Query 30513 TGCCCGTCCTGTCTCC 30528 | ||||||| |||||| Sbjct 11274 TTCCCGTCCGGTCTCC 11289 >seq4038 Length=37899 Score = 111 bits (122), Expect = 1e-19 Identities = 189/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 49066 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAA 49125 ||||||| | |||||| || | | |||||| | || ||| | ||| ||| | | Sbjct 17990 TCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCTTGACGGGGAAGTCCTCGGCCGCGT 18049 Query 49126 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49185 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 18050 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 18109 Query 49186 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 49245 ||| || || || || || || |||||||| | || ||||| | ||||| ||| Sbjct 18110 TGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAGGCGCCACGCGCGCGTAGCAGCCGT 18169 Query 49246 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCACGA 49305 ||||| | | ||||||||||||| || ||| || || || | ||||| |||| Sbjct 18170 CGGGCACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGG 18229 Query 49306 CCGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 49339 | || ||||||| |||||| |||||||| Sbjct 18230 CGTCGTAGGCGGCCGACAGGTCCAGGCCCGCGGC 18263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406270373727636