Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5736 145 7e-30 seq5738 131 1e-25 >seq5736 Length=80658 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 56615 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 56674 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||| || || ||||| || ||||| || || || || Sbjct 56675 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 56734 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | || | ||| |||||| Sbjct 56735 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAAC 56794 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 56795 ATCCAGAAGGAGTCGACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGCAT 56844 Score = 129 bits (142), Expect = 5e-25 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 56842 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTC 56901 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||| || || ||||| || ||||| || || || || Sbjct 56902 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 56961 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| | || | ||| ||||| Sbjct 56962 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAA 57021 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT--TTTGCGTTTGCGG 27209 ||| || ||||||||||| | || |||| || || || |||| Sbjct 57022 CATCCAGAAGGAGTCGACTCTCCACCTGGTGCTTCGCCTTCGCGG 57066 >seq5738 Length=44011 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 34286 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 34345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || || || || || || || Sbjct 34346 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 34405 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 34406 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 34465 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| |||| |||| |||||||| Sbjct 34466 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGCAT 34515 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 34513 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 34572 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || || ||||| ||||| || || || || || || || Sbjct 34573 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 34632 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 34633 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 34692 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || ||||||||||| | || |||| |||| |||| ||||||| Sbjct 34693 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGCA 34742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434874456932160