Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq5317 192 3e-44 >seq5317 Length=6148 Score = 192 bits (212), Expect = 3e-44 Identities = 400/591 (68%), Gaps = 11/591 (2%) Strand=Plus/Plus Query 66527 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCAC-GC 66585 || |||||||| ||||||||||| || || || ||| |||| ||| || || Sbjct 1575 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACAACGCTGGCGCTGAGTTGC 1634 Query 66586 GGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCT 66645 || ||| || |||||| | || || | | |||| ||||||||| ||||| || | Sbjct 1635 ATTGCTCAA-GCTCAGAAGACTGGCGGGACCTGTGCCTTCATCGACGCAGAGCATGCCAT 1693 Query 66646 GGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCC 66705 ||| | | ||||||||||| || ||||| ||| | ||| ||| || ||||| Sbjct 1694 TGACGCCCACTACGCCAAGGCTCTTGGTGTCGACATTGACGCGCTCTACGTCTCGCAGCC 1753 Query 66706 CGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC 66765 || | ||||| | || |||||||||| ||| ||| ||| ||| || | || Sbjct 1754 GGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGGGCAGTGGA 1813 Query 66766 CATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACAT 66825 | |||| || | ||| |||||||| |||||||||||||| ||||| ||||| || || Sbjct 1814 CCTCGTGGTGCTGGACAGTGTGGCGGCTCTGGTGCCGCGCGCGGAGCTGGAAGGTGAAAT 1873 Query 66826 CGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCAC 66885 || ||| || | | ||||| |||||||||||| ||||| |||| ||||| || Sbjct 1874 GGGAGACCAGCAGATTGCGCTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGGAAGCTGAC 1933 Query 66886 TGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAA 66942 || | | |||| |||| ||| | | ||| | ||||| | ||| |||| Sbjct 1934 GGGATCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAAATCCGCCAGAA 1990 Query 66943 GATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTT 67002 | | |||| | | || ||| | |||| || |||| || | ||| || | | Sbjct 1991 GGTGGGCATCAT---CTTCGGATCTCCTGAGGTGACGTCGGGTGGCACGGCGCTGCGTTA 2047 Query 67003 CTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGC 67062 |||||| || || || |||| | ||||||| | || ||||| ||||| ||| Sbjct 2048 CTACGCGTCTGTGCGGCTGGACATTCGTCGCAAGACGGCCATCAAGGAGGGCGACCAGGT 2107 Query 67063 TGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 67113 |||||||||| ||| ||||||||| | |||||||||||||||| |||| Sbjct 2108 TGTCGGCAACGAGACCGTGGTGAAGGTGGCCAAGAACAAGCTGGCCTCGCC 2158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242836875403122