Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6666 257 2e-63 >seq6666 Length=19192 Score = 257 bits (284), Expect = 2e-63 Identities = 475/694 (68%), Gaps = 7/694 (1%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||| || || ||| ||| ||||| || |||| |||||| ||||||||| || Sbjct 10598 GGGAATGGGCGCGGCATTCGCGTAAGCTGCTTCTGGAGAGGCTCGACGTGGTTCAGATAC 10657 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| ||||||| || || | Sbjct 10658 ACGTGGGCATCGCCAATAACGT--GGACAAACTCACCAGGCTTCAACCCCGTCACCTGCG 10715 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | | || ||| |||| ||||| || || || ||||||||||| || | ||||||| Sbjct 10716 CCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGT 10775 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||| ||||||| ||| || | || |||||||| ||||||| Sbjct 10776 CGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCGTCAGCCACGTAGAACTGGCAGA 10835 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| ||||||||||| | ||||||| |||||||||||| ||| || Sbjct 10836 ACATGTGGCACGGCGGGAGCGCCATTTCATTGAGATCCGCCGGGTTCCACGCCGACAGCA 10895 Query 6804 CGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCG 6863 |||||| || ||| |||||| || ||| || || | | ||||||||| Sbjct 10896 CGATCCGTCGGTCGGTCGGGTTCGTGCGCAGCTTGTGAATAACCTCCGCGAGCTGGTCCA 10955 Query 6864 CTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACT 6923 | ||||| || ||||| || | | || |||| ||||||||||| | ||||| Sbjct 10956 CGCCCTGGTTCGTGTAGTCGGCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACT 11015 Query 6924 GGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCA 6983 |||| |||||||| || || | |||||| | || || ||| | | || || |||||| Sbjct 11016 GGAAGCCGTAGACAGGTCCGAGATCGCCCACTTCTCGCGATTGCAGTCCACGACTGTCCA 11075 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043 || | || || || || | |||||||||| | | || | ||| | | Sbjct 11076 GATACTCCCGCGATCCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCG 11135 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 ||||| | || || | |||||||||||||||||| ||||||| |||| |||| | Sbjct 11136 CACTCGTGTCTCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGC 11195 Query 7104 GTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGA 7160 | || ||||| ||||| || || | | ||| || || | || ||| | ||| | Sbjct 11196 GCTTGGTCGTGAGCAGTGGGAACACGTTGTCCCTTAGACTGAACCGCATCTGCGCGCCAA 11255 Query 7161 ACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 | || || || || || || || |||||||| || Sbjct 11256 AGACCGACAGCGTGCCTGTTCCCGTCCGGTCTCC 11289 Score = 257 bits (284), Expect = 2e-63 Identities = 475/694 (68%), Gaps = 7/694 (1%) Strand=Plus/Minus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||| || || || || || || || || ||| | ||| || | || || Sbjct 11289 GGAGACCGGACGGGAACAGGCACGCTGTCGGTCTTTGGCGCGCAGATGCGGTTCAGTCTA 11230 Query 34211 CGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| | | || || ||||| ||||| || || |||| |||| ||||||| ||| Sbjct 11229 AGGGACAACGTGTTCCCACTGCTCACGACCAAGCGCGTGTTCTGGCGCGGCGTGGCGGAG 11170 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | || || | ||||| | | ||| | || | Sbjct 11169 GAGCTGCTGTGGTTCATCAGTGGAGACACGAGTGCGCACACGCTGCAGCAGAAGGACATC 11110 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| | || || || || | |||||||| || || | | ||| || Sbjct 11109 CACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCGTGGACTGCAATCGCGA 11050 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | || || |||||||| ||||||||| | ||||||||||| |||| Sbjct 11049 GAAGTGGGCGATCTCGGACCTGTCTACGGCTTCCAGTGGCGGCACTTTGGGGCCAAGTAC 10990 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 || | | || ||||| || ||||| | ||||||||| | | || || || Sbjct 10989 ACGGACATGCATGCCGACTACACGAACCAGGGCGTGGACCAGCTCGCGGAGGTTATTCAC 10930 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 | || |||||| ||| || |||||||| ||| |||||||||||| |||| Sbjct 10929 AAGCTGCGCACGAACCCGACCGACCGACGGATCGTGCTGTCGGCGTGGAACCCGGCGGAT 10870 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 ||| | ||||||||||| |||||||||| ||||||| |||||||| || | || Sbjct 10869 CTCAATGAAATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCTGACGGC 10810 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||| ||||||| ||| | || || || |||| |||||||| | || ||||||||||| Sbjct 10809 GAGTTGTCCTGTCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAAT 10750 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 || || || ||||| |||| ||| || | || || || ||||||| ||||| Sbjct 10749 ATCGCCAGCTACGCGTTGCTGACGCGACTGGTGGCGCAGGTGACGGGGTTGAAGCCTGGT 10690 Query 34748 GAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCC 34805 ||| | || | |||| | || ||||| || | || ||||||||| |||||| |||| Sbjct 10689 GAGTTTGTCC--ACGTTATTGGCGATGCCCACGTGTATCTGAACCACGTCGAGCCTCTCC 10632 Query 34806 GGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || ||||| ||| ||| || || ||||| Sbjct 10631 AGAAGCAGCTTACGCGAATGCCGCGCCCATTCCC 10598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448217108687760