Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5227 109 5e-19 seq5736 104 2e-17 seq5738 102 7e-17 >seq5227 Length=11794 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || ||| |||||| ||||||||| |||| | | | | Sbjct 2260 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 2318 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || |||||||| || || ||||| Sbjct 2319 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 2378 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 2379 GATCTGCAT 2387 >seq5736 Length=80658 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || ||| || || || |||| || Sbjct 56824 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 56765 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || ||| |||||| Sbjct 56764 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 56705 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || |||| ||| | | | || || || ||||||||||| |||||| | | Sbjct 56704 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 56646 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| || || || ||||| |||||||| Sbjct 56645 TGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 56612 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||| || || || | Sbjct 57058 GCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 56999 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || |||||||||||||| | || | || ||| || Sbjct 56998 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 56939 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || |||| ||| | | | || || || ||||||||||| ||||| Sbjct 56938 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 56880 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || ||||| || || || ||||| ||||| Sbjct 56879 TCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843 >seq5738 Length=44011 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||| || || || | Sbjct 34501 GCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 34442 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | | ||| || Sbjct 34441 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 34382 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || ||||| || | ||| | | | || || || ||||||||| | ||||| Sbjct 34381 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 34323 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||||||||| || || ||||| |||||||| Sbjct 34322 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 34283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||| || || || | Sbjct 34729 GCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 34670 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | | ||| || Sbjct 34669 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 34610 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || ||||| || | ||| | | | || || || ||||||||| | ||||| Sbjct 34609 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 34551 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||||||| || || ||||| ||||| Sbjct 34550 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429503284791779