Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq5227 109 5e-19
seq5736 104 2e-17
seq5738 102 7e-17
>seq5227
Length=11794
Score = 109 bits (120), Expect = 5e-19
Identities = 139/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || || | || || || |||| || ||||| ||||| || || ||
Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
|| ||||||||||| | || | || ||| |||||| ||||||||| |||| | | | |
Sbjct 2260 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 2318
Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275
| | | ||| || ||||||||||| |||||| | || |||||||| || || |||||
Sbjct 2319 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 2378
Query 39276 GATTTGCAT 39284
||| |||||
Sbjct 2379 GATCTGCAT 2387
>seq5736
Length=80658
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || || ||| || || || || || ||| || || || |||| ||
Sbjct 56824 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 56765
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | || | || ||| ||||||
Sbjct 56764 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 56705
Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || || |||| ||| | | | || || || ||||||||||| |||||| | |
Sbjct 56704 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 56646
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || ||||| || || || ||||| ||||||||
Sbjct 56645 TGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 56612
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || ||| || || || |
Sbjct 57058 GCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 56999
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || |||||||||||||| | || | || ||| ||
Sbjct 56998 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 56939
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| || || |||| ||| | | | || || || ||||||||||| |||||
Sbjct 56938 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 56880
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || || ||||| || || || ||||| |||||
Sbjct 56879 TCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843
>seq5738
Length=44011
Score = 102 bits (112), Expect = 7e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || ||||| ||| || || || || || ||| || || || |
Sbjct 34501 GCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 34442
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||| | || | | ||| ||
Sbjct 34441 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 34382
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| || ||||| || | ||| | | | || || || ||||||||| | |||||
Sbjct 34381 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 34323
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| | || ||||||||||| || || ||||| ||||||||
Sbjct 34322 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 34283
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || ||||| ||| || || || || || ||| || || || |
Sbjct 34729 GCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 34670
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||| | || | | ||| ||
Sbjct 34669 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 34610
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| || ||||| || | ||| | | | || || || ||||||||| | |||||
Sbjct 34609 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 34551
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || ||||||||||| || || ||||| |||||
Sbjct 34550 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429503284791779
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |