Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6666 129 5e-25 seq4038 116 3e-21 >seq6666 Length=19192 Score = 129 bits (142), Expect = 5e-25 Identities = 429/667 (64%), Gaps = 25/667 (4%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || || || ||||||| || || ||||| ||||| || | |||||||||||| || Sbjct 10634 AGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCACCA 10693 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | | ||| || || || |||| || ||| || | | |||||||||||| || Sbjct 10694 GGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTG 10753 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | ||| || || | ||| ||| Sbjct 10754 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCG 10813 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 || |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 10814 TCAGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCATTTCATTGAGA 10870 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGA 29939 || |||||||| || ||| | ||| || | ||| || || | || | || Sbjct 10871 TCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTGCGCAGCTTG 10930 Query 29940 TG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 || | || | ||| ||||| ||||| ||| || |||||| | Sbjct 10931 TGAATAACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCGGCATGCATG 10984 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 | || |||| ||||||||| ||||| || ||||| || || ||| Sbjct 10985 TCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGGTCCGAGATCGCCC 11044 Query 30059 TCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30117 |||| | | | | | || || | |||||| | | || | || || ||| ||||||| Sbjct 11045 ACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCA 11103 Query 30118 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||| | | |||||| ||| | | | ||| || |||| ||||||||| Sbjct 11104 GATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAG 11163 Query 30178 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----T 30233 |||||||||| | ||| | ||| || || | |||||||||||| || || ||| | Sbjct 11164 CAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGGGAACACGTT 11223 Query 30234 GTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCC 30293 ||||||| || | | ||| | ||| | ||||| | |||| || || || |||| Sbjct 11224 GTCCCTT-AGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTGTTCCCGTCC 11282 Query 30294 TGTCTCC 30300 |||||| Sbjct 11283 GGTCTCC 11289 >seq4038 Length=37899 Score = 116 bits (128), Expect = 3e-21 Identities = 183/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 49871 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAA 49930 ||||||| | |||||| || | | |||||| | || ||| | ||| | || | | Sbjct 17990 TCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCTTGACGGGGAAGTCCTCGGCCGCGT 18049 Query 49931 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49990 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 18050 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 18109 Query 49991 CGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 50050 ||| || ||||| || || || |||||||| | || ||||| | ||||| ||| Sbjct 18110 TGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAGGCGCCACGCGCGCGTAGCAGCCGT 18169 Query 50051 GGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGA 50110 ||||| | | | ||||||||||| || ||| || ||||| | ||||| |||| Sbjct 18170 CGGGCACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGG 18229 Query 50111 CGGGGTGAGCGGCCGCCAGGTC 50132 || || ||||||| |||||| Sbjct 18230 CGTCGTAGGCGGCCGACAGGTC 18251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406123188228538