Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6666 178 1e-39 seq4038 116 3e-21 >seq6666 Length=19192 Score = 178 bits (196), Expect = 1e-39 Identities = 449/676 (66%), Gaps = 19/676 (3%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| || || || ||||| | ||| || ||||| || || || | |||| Sbjct 10622 AGCTGCTTCTGGAGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 10681 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | | ||| || || || |||| || ||| || | | |||| Sbjct 10682 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 10741 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 |||||||| || || || || || || |||||||| |||| | |||||| | |||||| Sbjct 10742 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAG 10801 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || || ||||| ||||| || | ||||||||| || || ||||| Sbjct 10802 GACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATT 10861 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTT 27428 | || |||||||| || ||| | ||| || | ||| || || | || Sbjct 10862 TCATTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTG 10921 Query 27429 C----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 | || || | || | ||| ||||| ||||| ||| || |||||| Sbjct 10922 CGCAGCTTGTGAATAACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCG 10975 Query 27484 ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCC 27543 | |||||||||||||| || || || |||| ||| ||||| ||||| || ||||| Sbjct 10976 GCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGGTCCG 11035 Query 27544 AGGTCTCCCTCTTCCCTGTGCTCGAAG-CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 27602 || || ||| |||| | | | | | || || | |||||| | | || | || || || Sbjct 11036 AGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATT 11094 Query 27603 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 27662 | |||||||||| | | |||||| ||| | | | ||| || |||| Sbjct 11095 GCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGAT 11154 Query 27663 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 ||||||||||||||||||| | ||| | ||| || || | |||||||||||| || || Sbjct 11155 GAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGG 11214 Query 27723 AAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 27778 ||| |||||||| || | | ||| ||| | ||||| || |||| || | Sbjct 11215 GAACACGTTGTCCCTT-AGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTG 11273 Query 27779 TGCCCGTCCTGTCTCC 27794 | ||||||| |||||| Sbjct 11274 TTCCCGTCCGGTCTCC 11289 >seq4038 Length=37899 Score = 116 bits (128), Expect = 3e-21 Identities = 190/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 44858 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTTGACCCGAAAGGGGTTGCACCCAA 44917 ||||||| | |||||| || | | |||||| | |||||| | ||| | | | | Sbjct 17990 TCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCTTGACGGGGAAGTCCTCGGCCGCGT 18049 Query 44918 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 44977 ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 18050 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 18109 Query 44978 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 45037 ||| || || || || || || |||||||| | || ||||| | ||||| ||| Sbjct 18110 TGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAGGCGCCACGCGCGCGTAGCAGCCGT 18169 Query 45038 GGGGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCCTAAGGAGGGGACCACGA 45097 ||||| | ||||||||||||||| || ||| || |||| | ||||| |||| Sbjct 18170 CGGGCACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGG 18229 Query 45098 CCGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 45131 | || ||||||| |||||| |||||||| Sbjct 18230 CGTCGTAGGCGGCCGACAGGTCCAGGCCCGCGGC 18263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369470799268373