Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq3583 98.7 4e-16 >seq3583 Length=16054 Score = 98.7 bits (108), Expect = 4e-16 Identities = 193/277 (70%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| ||||| || | |||||||||| || | | | | Sbjct 6027 CCATGCACATGTGCGTGGCCTCGATGACGACGGCCACGCCCTTGGGCTCGATGACGCCCA 5968 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | || || || |||||||| ||||| | ||| || | | Sbjct 5967 TGATGGCGTTGGCGATCTGCTTGGTCAGGCGCTCCTGCACCTGCAGCCTGCGCGAGAAGA 5908 Query 31123 CATGTCCGC-CAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGC 31181 | | ||| || | || ||||||||| || |||| | ||||| || ||||||| Sbjct 5907 CCT---CGCTCACTCTGGCCAGCTTGCTGAGCCCCAGCACCTTGCCGTTGGGGATGTAGC 5851 Query 31182 TGATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGG 31239 ||| ||| ||| |||| || ||| | | ||| |||||||| ||| ||||| | | Sbjct 5850 CGAT-GTGCACCTTGCCCGCGAAGGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTC 5793 Query 31240 GATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 |||||||||||| | ||||||| ||| || | |||| Sbjct 5792 GATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 5756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187271622890688