Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5738 179 8e-40 seq5736 178 3e-39 seq5227 136 8e-27 seq3518 127 4e-24 seq3557 113 9e-20 seq5150 107 4e-18 seq1091 107 4e-18 >seq5738 Length=44011 Score = 179 bits (198), Expect = 8e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 34512 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 34453 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 34452 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 34393 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 34392 ATACCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 34334 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| || Sbjct 34333 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 34283 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 34740 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 34681 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 34680 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 34621 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 34620 ATACCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 34562 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 34561 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514 >seq5736 Length=80658 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | || || || |||||||||||||| Sbjct 56841 CCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 56782 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 56781 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56722 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 56721 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 56662 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| || |||| ||||| ||||| |||||||| ||| Sbjct 56661 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTTC 56611 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| ||||| || | || || || |||||||||||||| Sbjct 57069 CCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57010 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 57009 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56950 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 56949 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 56890 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 56889 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843 >seq5227 Length=11794 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 2260 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 2318 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 2319 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 2378 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 2379 GATCTGCAT 2387 >seq3518 Length=62287 Score = 127 bits (140), Expect = 4e-24 Identities = 299/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAG-AATACTCGGGATAATTGGGA 273678 ||||||||| || || ||||| | ||||| || || || || |||||| || || | Sbjct 11994 AGACCAACCTGTACCGATACCCTCCGCGCCATTAACGAGCAACAC-CGGGATGATAGGCA 12052 Query 273679 CATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCAT 273738 | || || | ||||||| | ||||||||||| | ||| ||||| || |||| Sbjct 12053 CGTAGTACACAGGCTCAACTGGGAAACCATCGTCGTCAGCGTAGCGCAACAGCGCGTCAT 12112 Query 273739 CCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCAC 273798 | ||| ||| ||| ||||| || | || |||||| ||||| | | || Sbjct 12113 CTTCCTCAGGGAACACCAGGCGCGTGTGCTTCTGAAGCAGCGTGAAGATGTAACGAGGAC 12172 Query 273799 TCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCT-CGGG--CAGTAGCC 273855 | || |||||||| || ||||| | | |||||||||||| |||| ||| ||| Sbjct 12173 TAGCGGCATCCTTGCCTCCCTGCAGTCGAGTACCAAACTGACCGGACGGGTACAGCAGCG 12232 Query 273856 AGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGG 273915 | | ||||||| || ||| ||||||| ||||| ||||| || ||| || || | Sbjct 12233 GG---AGGTTGTTGGAGCCCACGAAATCCTGCGCCATGTTCACAATCGTCGAGTGCAGCG 12289 Query 273916 ATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACC 273974 | ||||||||||||| ||||| ||||||| | | | ||||| | || || ||| Sbjct 12290 AAGCCTCGCCGTGGTGGTAGGCCGTGTGTTC-ACTACAGTAACCTGCAAGTTGCGCCACC 12348 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGC 274034 ||||| || ||||| | || ||||| | || | | |||||| ||||| ||| Sbjct 12349 TTCACCTCACTCGTTAGCTTGCGCTTCAGACAGGCGAAGAGCACCTTGCGCTGTGAGATT 12408 Query 274035 TTGAACCCATCAACGACCGATGG 274057 |||| || || || ||||| || Sbjct 12409 TTGAGTCCGTCGACCACCGACGG 12431 >seq3557 Length=22309 Score = 113 bits (124), Expect = 9e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| | Sbjct 8064 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 8005 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 8004 AAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 7950 >seq5150 Length=29312 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| || Sbjct 14877 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 14936 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 14937 TGCGACTCAATGTGGTGGAAAGCGTGCTGGGCCACGTAGGCGAAACGCATGGCAGGGTGC 14996 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| || || || |||| || || || || Sbjct 14997 TTCCACACCTGGCCGCTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 15056 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 15057 TTACCGGCACCGTT 15070 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| ||||| |||| || | ||| || |||||||| ||| ||| Sbjct 15735 GGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCG 15794 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||| || || |||| ||||||||| Sbjct 15795 TTGGGGCCGCACAGACCGTAACGGTGGCCGCGCTTGAGGCGAAGGCGGGCGTTGTTCAGC 15854 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 |||||| ||||||| || || || |||||||| || | ||||| || Sbjct 15855 AGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGATC 15901 >seq1091 Length=38999 Score = 107 bits (118), Expect = 4e-18 Identities = 253/382 (66%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | |||||| |||||||||| || || |||||| || || ||| Sbjct 12002 GGGTTGTAGTTGGGAACGGAGCTAGACCAACCCGTTCCGATACCGTCGCTGCCGTTGACC 11943 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | ||||||| |||| || |||| ||||| || | ||||| |||| Sbjct 11942 AGCACCATTGGGATAACGGGGATGTACCATTCCGGCTCGATCGACTGTCCATCTTCGTCC 11883 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 |||||||||| | | | ||| | | || | | | ||||| | | | || Sbjct 11882 AGGTACTTCAGAACGTCGTTGTCCAGAGGATCGTAGATCCGGCGCGTGAGCTGCTCCAAA 11823 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | || || || |||||||| || || | || ||| ||| Sbjct 11822 TTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 11763 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 ||||| |||| || || | ||||||||| || ||| | ||||||||||| ||| Sbjct 11762 TGACCAATGGGCGACAGGAGGTGCACGTTGTTGCTGCCAACGAAGTCCTGAGCCATGTTC 11703 Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956 |||||| ||||| || ||||||||||||| || || ||| || | | |||| Sbjct 11702 ACGATACAGCCCTGCAGACTCGCCTCGCCGTGGTGGTATGCAGAGTGCTCCGACACATAA 11643 Query 273957 CCACTGAACTGAGCAACCTTCA 273978 ||| | || || ||||||| Sbjct 11642 CCAGCTAGTTGTGCCACCTTCA 11621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046630796090282