Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5738 165 8e-36 seq5736 163 3e-35 seq5227 159 3e-34 seq3557 131 2e-25 seq4038 96.9 3e-15 >seq5738 Length=44011 Score = 165 bits (182), Expect = 8e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 34741 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 34682 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 34681 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 34622 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 34621 GATACCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 34563 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || |||||||||||||| ||||| ||||||||| Sbjct 34562 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 34513 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 34513 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 34454 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 34453 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 34394 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 34393 GATACCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 34335 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | ||| || || || |||||||||||||| ||||| |||||||| || Sbjct 34334 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 34283 >seq5736 Length=80658 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 56842 GCCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 56783 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | || Sbjct 56782 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 56723 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| |||||||| ||| | | | | ||| || ||||| Sbjct 56722 GATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 56664 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | |||| ||| ||||| || || ||||| ||||| ||||| |||||||| || Sbjct 56663 CGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 56612 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 57069 CCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57010 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | || Sbjct 57009 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56950 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| |||||||| ||| | | | | ||| || |||||| Sbjct 56949 ATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 56891 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||| ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 56890 GTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 56842 >seq5227 Length=11794 Score = 159 bits (176), Expect = 3e-34 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | || | || |||||||||| |||||| ||||| || | Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 2316 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 2317 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2376 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 2377 AAGATCTGCATG 2388 >seq3557 Length=22309 Score = 131 bits (144), Expect = 2e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 8066 CCACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 8007 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 8006 GAAAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 7947 Query 41753 GG 41754 || Sbjct 7946 GG 7945 >seq4038 Length=37899 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 ||||||||| || | || ||||| ||||||||||| |||| | |||||| | Sbjct 18167 GGCTGCTACGCGCGCGTGGCGCCTCGCTCCGGCCTCGCGCTCAAGAAGTTCATCGACACG 18108 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 18107 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 18048 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATC 85958 | | ||||| | ||| | ||| || ||| ||||| ||| ||||| Sbjct 18047 GCGGCCGAGGACTTCCCCGTCAAGCGCGGCGACCGCGTGGCGCAGCTCATC 17997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462257289959600