Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq467 161 2e-34 seq1706 91.5 3e-13 seq150 87.8 4e-12 >seq467 Length=26389 Score = 161 bits (178), Expect = 2e-34 Identities = 677/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| || ||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 13266 CTCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAG 13325 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 13326 GTGAGACTCAATGTGGTGGAATGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 13385 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| | ||||| |||| ||| || | || Sbjct 13386 CTTCCACACCTGACCACTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATAGTCGA 13445 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCAT- 319228 || || |||||||| ||||| ||| |||| | | ||| | | | ||| Sbjct 13446 CTTACCGGCACCGTTGGGGCCCAGCACGGCGATACGGCT------CGAAAGC-GCGCACG 13498 Query 319229 TCAC------GTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 |||| ||||| | | || || ||||| |||| | || || | Sbjct 13499 TCACCGAGATGTTGTTGATCGACGGCTTGGGGGTTCCCGGGTACTGGTACGAG-CAGTTC 13557 Query 319283 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || || ||||||| |||| ||||| | | ||||| || ||||| ||| Sbjct 13558 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCCGGG 13617 Query 319342 AACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||| | ||| | ||| || |||| || ||||||| | | || || Sbjct 13618 AACGTGAACTTCACATTGTC--CGACTCG---AGCTCGTAGTACGCCTTGGCCTCAGGCT 13672 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || || |||||||||||| || || |||||||| |||||||||| || | |||| Sbjct 13673 TCTGCTCCACGAACTCGGAGAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCGT 13729 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | || || || |||||| || | ||||||||| || |||||||| ||||| || | Sbjct 13730 AGTGAATGATGTTGGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATCG 13789 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAA 319576 | | |||| | ||| | ||||||| | || ||| ||||| ||| | Sbjct 13790 AGGTCACGTTCGGCAGGCTCGTCAGGTAATTCTCCAGCCAGGCGACGTTCTTGACATCCA 13849 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 319636 ||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| || | Sbjct 13850 AGTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCA 13909 Query 319637 GAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 319696 | | |||||||| ||||| || || ||||||||| | || ||| || | Sbjct 13910 GCTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCA------CACCCTGGGCCTGCA 13963 Query 319697 TATCA------AAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAATG 319749 | ||| ||||| || | || || || | | || ||||||| || Sbjct 13964 TCTCAGGGGTGAAGCCCACGCTGCCGAGGGT-GTCCCTAACCTCGTCACGAG-----GTG 14017 Query 319750 TTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGAC 319809 | || ||| | | |||||| |||||||| | | | | | || || || Sbjct 14018 TGTT-CTTCAGGTCCTCATCAACAAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGAA 14076 Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 319868 | | || | ||| || ||| | ||||||||| | | ||| | |||||| || || Sbjct 14077 GCCTGCAGGTTGTGCTCAACGAACACAGTTTTCAGCTCGT-CGCGGCTGGGGAAGCCCTC 14135 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||| || || |||||||||||||| || ||||| || || || || || Sbjct 14136 GAGCTGGCCATTGGAGATGGCGCGCATCAGGGTCGACTTACCACAACCATTGGGACCGCA 14195 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| || || || ||| | || | ||||||||| ||||| | || Sbjct 14196 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACC 14255 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||| || || || || || || || | ||||| || Sbjct 14256 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 14291 >seq1706 Length=15920 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 15834 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 15775 Query 165771 CCACG 165775 ||||| Sbjct 15774 CCACG 15770 >seq150 Length=92316 Score = 87.8 bits (96), Expect = 4e-12 Identities = 552/866 (64%), Gaps = 30/866 (3%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| | | ||| ||||| | |||||||||||||||| ||| | |||||| Sbjct 90886 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGG 90945 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 || | |||| || || || ||| ||| || |||||| | ||| |||| | Sbjct 90946 ACGGCCGAGG-AGCTCGACTTGGTGCACGACCTCAATGACTGG---GCGAACCTCACGAA 91001 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 | |||| ||||| |||||||| ||| | || | ||| || || | | ||| ||||| || Sbjct 91002 CAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGT 91061 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 || || || ||| | ||||| || ||||| ||| || ||||| || || Sbjct 91062 GAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTT 91121 Query 229998 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGA 230057 || | | ||| | || ||| ||||| || || || | ||||| || || Sbjct 91122 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 91181 Query 230058 CGCGCTTATTTCCGACG--AGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACATC 230115 | || || |||| | |||| | || | || | |||||| || | |||| Sbjct 91182 CACGTACATCAAGGACGGTGTCGAGAA--GGACCACCTGCTGCGTGCCATCGAGACCATC 91239 Query 230116 CCG-GCGGTTCA-TAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCGT 230173 ||| ||| ||| || || || | ||||| | | ||| || || || || | Sbjct 91240 CCGTGCG--TCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGCGTGTGTCCT 91297 Query 230174 -TTGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 | || |||||||| | |||| | || || || || | || || || | Sbjct 91298 CCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCT 91357 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| | ||||| ||||| ||| || | ||||| || ||| | | || || | Sbjct 91358 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATG 91417 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAG 230349 || ||||||| || |||||||| | || || | | |||| || ||||| || ||| Sbjct 91418 AGCTCATCAGCCGTGACGAGGGCATGCA-CACCGACTTCGCTTGCCTCATGTACTCCAAG 91476 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 || |||||||| || || || || | | || | || || || | | Sbjct 91477 CTGATCAACAAGCTGCC-GGAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGGTGAT 91535 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTGAAC 230467 || | |||||| | | ||| | ||| || | || || || |||||| | | | Sbjct 91536 TGAGCACGAGTTCGTGCGCGACTC-GCTCCCGGTGGAGTTGATCGGTATGAACTCGGGGC 91594 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT-TACGAG 230526 | ||| | || |||||||| ||||| ||||||||| || || ||| | | || | Sbjct 91595 TCATGTGCCAATACATCGAGTTCGTGGCCGACCGC----CTGCTGTACTCGCTGGGCGTG 91650 Query 230527 ---AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 || | |||||| | |||||||| || | | ||||| | || ||||| || || Sbjct 91651 TCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGC 91710 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||||||||| |||||||| Sbjct 91711 AAGACCAACTTCTTCGAGAAGCGTGT 91736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057766791225230