Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq898 104 2e-17 seq150 95.1 1e-14 >seq898 Length=32307 Score = 104 bits (114), Expect = 2e-17 Identities = 300/457 (66%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || ||||||||||| || | |||||||| | ||||| | ||||| || | Sbjct 19227 ACATGAGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGA 19168 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | ||| ||||| || || ||||| | ||| || | || | || || || | Sbjct 19167 AGCTGAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCG 19108 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| || || |||||||| | | || || | ||| | || | Sbjct 19107 AGAAGAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC 19048 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || | |||| | |||||| | || | ||| |||||||| Sbjct 19047 GCGGGTCGCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCG 18989 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 || || | | | | || ||| ||| | || ||||| || ||||| || Sbjct 18988 ATAGCACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCAGC 18929 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||| | || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 18928 GAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAGCC 18869 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 || | | ||| ||||| | ||| |||| || ||||| || || |||||||||| Sbjct 18868 TCGGGCACTTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTCTCATTGACGATGCCGT 18811 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || || ||||| || || | | ||||| ||||| Sbjct 18810 CACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAA 18774 >seq150 Length=92316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||| | || ||||| |||||||| ||||| ||||| Sbjct 91190 ATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGG 91131 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || |||| | || ||||| | ||| |||| || | Sbjct 91130 AAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCA 91073 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || ||||||||||| |||||||| || || || || |||| | ||||| ||||| Sbjct 91072 GGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGAAAGCCAGCACGTGCTTGATGAA 91015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517518293000280