Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq150 363 2e-95 seq898 324 1e-83 seq313 152 5e-32 seq355 136 4e-27 seq381 100 3e-16 >seq150 Length=92316 Score = 363 bits (402), Expect = 2e-95 Identities = 602/860 (70%), Gaps = 12/860 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || |||||||||| ||| |||||| | |||||||| || | | ||| Sbjct 90847 GAGCCGTTCCTCGTCGAGAACCCCAACCGCTTCGTGCTCTTCCCCATCCAGGAGCACGAC 90906 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| ||||| ||||| || |||||||| | ||||||| | ||| || Sbjct 90907 GTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCCGAGGAGCTCGACTTG 90966 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | ||| | ||||||| | | | | |||||||||| || |||||||||||| Sbjct 90967 GTGCACGACCTCAATGACTGGGCGAACCTCACGAACAACGAGCGTCACTTCATCAAGCAC 91026 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 |||||||| || || || ||||||||||| ||||| |||||||| |||| | | ||| Sbjct 91027 GTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTC 91086 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || ||||||||| | ||||| || |||||||||||||| ||||||||||| ||| Sbjct 91087 AGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 91146 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG--G 116933 ||| | |||||||| | || ||| ||||| ||||||||| | ||| | | Sbjct 91147 AACATCCACTCGGAGGTCTACTCGCTGCTCATTGACACGTACAT--CAAGGACGGTGTCG 91204 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||| || || || ||||||||||| || |||||||||| |||| || | | Sbjct 91205 AGAAGGACCACCTGCTGCGTGCCATCGAGACCATCCCGTGCGTCACGAAGAAAGCTCACT 91264 Query 116994 GGGCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||||| | ||| || || || | | | || ||| | ||||| ||| ||||||| Sbjct 91265 GGGCGCTCAGGTGGTGCGACCCGC-GTGTGTCCTCCTACCCGGAGCGTCTGCTGGCCTTT 91323 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || ||||| ||||| ||||||| |||||| ||| | | || || ||||||||||| Sbjct 91324 GCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCTGCTCTATCTTCTGGCTCAAGAAG 91383 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||||||||||||||| || | ||| || ||||||||| | | |||||||| || Sbjct 91384 CGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGAGCTCATCAGCCGTGACGAGGGCATG 91443 Query 117173 CATTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 || |||||| || || | || | ||||| | ||| ||| | | || Sbjct 91444 CACACCGACTTCGCTTGCCTCATGTACTCCAAGCTGATCAACAAGCTGCCG-GAAAGCCG 91502 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 || | || ||||| || |||||| || | || ||||| ||| | ||| || Sbjct 91503 CGTG-CA-CGAGATTGTGCGCGACGCTGTGGTGATTGAGCACGAGTTCGTGCGCGACTCG 91560 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 || |||||| || | || | || | | |||| ||||||||||||||||| Sbjct 91561 CTCCCGGTGGAGTTGATCGGTATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTG 91620 Query 117350 GCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTG 117409 |||||| | |||||| | ||||| || | ||| ||||||| | |||||| | Sbjct 91621 GCCGACCGCCTGCTGTACTCGCTGGGCGTGTCTAAGATCTACAACGCCAAGAACCCGTTC 91680 Query 117410 GACTTTATGAACCTCATCTC 117429 |||| ||| || | ||||| Sbjct 91681 GACTGGATGGACATGATCTC 91700 >seq898 Length=32307 Score = 324 bits (358), Expect = 1e-83 Identities = 561/805 (70%), Gaps = 24/805 (3%) Strand=Plus/Plus Query 116602 CCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGA 116661 ||| |||||| | |||||||| || | | ||| |||||| |||||||| |||||||| Sbjct 18632 CCGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGA 18691 Query 116662 GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCG 116721 ||| || |||||||| | ||||||| | |||||| | ||| | |||||||| | Sbjct 18692 GGCTTCCTTCTGGACGGCCGAGGAGCTCGACCTGGTGCACGACCTCAACGACTGGGCGAA 18751 Query 116722 CTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGA 116781 | | |||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 18752 GCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGA 18811 Query 116782 CGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGC 116841 |||||||||||| |||||||||| | | ||| | || ||||| ||| ||||||| Sbjct 18812 CGGCATCGTCAATGAGAATCTGGCCATGAACTTCAGCAACGAAGTGCAAGTGCCCGAGGC 18871 Query 116842 GCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGAC 116901 || ||||||||||| || ||||||||||| |||||| | |||||||| | || ||| Sbjct 18872 TCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCT 18931 Query 116902 CCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCAT 116958 ||||| ||||||||| | | | | |||| |||| | || | || || || Sbjct 18932 GCTCATTGACACGTACATCAAGGACACCGTGGAGAAGAACCACC---TCCTGTGTGCTAT 18988 Query 116959 CGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG-CCGGCA 117017 ||| ||||| ||||||||| | |||| ||| | ||||| || ||| || || || Sbjct 18989 CGAAACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGC- 19047 Query 117018 GAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT 117077 | | | | ||| | ||||| ||| |||| || || | || |||||| ||||||| | Sbjct 19048 GTGTGTCGTCCTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCT 19107 Query 117078 CGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTT 117137 ||||| || | | | || ||||||||||| |||||||||||||| || || | | Sbjct 19108 CGGGCTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCT 19167 Query 117138 TCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTG- 117196 || |||||| | ||| | |||||||| |||| || || || || | || Sbjct 19168 TCTCGAACGAGATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGT 19227 Query 117197 --TTCAAGCATTTGGTG---CAGC-GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 | ||||| ||||| ||| | | ||| || || ||| |||||||| | Sbjct 19228 ACTCCAAGC---TGGTGAACAAGCTGCCGGAGAGC----CGAGTCCACGAGATCGTGCGC 19280 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 ||||| || || ||||| ||| || ||| |||| |||||| ||| | || Sbjct 19281 GACGCTGTGAAGATTGAGCACGAGTTCGTCTGCGACTCGCTCCCGGTGGAGCTGATCGGC 19340 Query 117311 CTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGA 117369 | || | ||| | |||| || |||||||||||||| || ||| | |||||| | Sbjct 19341 ATGAACT-CGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTC 19399 Query 117370 GCTGGTCGGCGCCAAGCACTACAAC 117394 ||||| | ||||| ||||||| Sbjct 19400 GCTGGGTGTGTCCAAGATCTACAAC 19424 >seq313 Length=34572 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 24732 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24791 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | ||||| Sbjct 24792 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24850 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 24851 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 24910 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || || |||| || | ||||| Sbjct 24911 CATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGTGGCGG 24958 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || |||||||| || ||||| | ||||| || | Sbjct 24273 AAGATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCG 24332 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | || Sbjct 24333 TCGGACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGA 24391 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 24392 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 24451 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||||||||||| | |||||||| || || |||| || | || ||| Sbjct 24452 CAATATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24503 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||||| | ||||| || | | Sbjct 24504 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24563 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||||| ||||| ||||||||||| | ||||| Sbjct 24564 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCA 24622 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 24623 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 24682 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | |||||||| || || |||| || | || ||| Sbjct 24683 TATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGGC 24731 >seq355 Length=43175 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 42504 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 42445 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 42444 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 42385 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 42384 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 42325 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 42324 ATCCAGAAGG 42315 >seq381 Length=39271 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 34310 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 34369 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||||||||||||||||||| | || ||||| || ||| |||| Sbjct 34370 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCG 34422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515192015746960