Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq313 136 3e-27 seq1255 100 2e-16 seq355 93.3 4e-14 >seq313 Length=34572 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 24940 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 24881 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || |||||||| || || || |||||||||||||| | Sbjct 24880 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 24821 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || || | |||| | ||||| ||| || || | || | ||| ||| Sbjct 24820 ATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 24761 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||||||| || || || ||||||||| Sbjct 24760 CCCGTCAGAGTCTTCACGAAGATCTGCATG 24731 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||| ||| | || ||||| || || || ||||| |||||| Sbjct 24730 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24671 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| || |||||||| || || || Sbjct 24670 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24611 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| |||||| || || || | |||| | ||||| ||| || Sbjct 24610 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 24551 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||| ||||| |||||||| || || || ||||||||| Sbjct 24550 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24503 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||| ||| | || ||||| || || || ||||| |||||| Sbjct 24502 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24443 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| || |||||||| || || || Sbjct 24442 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24383 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| |||||| || || || | |||| | ||||| ||| || Sbjct 24382 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 24323 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||| ||||| |||||||| || || || |||||||| Sbjct 24322 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24276 >seq1255 Length=9666 Score = 100 bits (110), Expect = 2e-16 Identities = 288/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||| ||||| ||||| ||| || Sbjct 1526 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATG---GA 1582 Query 132977 CACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTAT 133033 | | | ||| || || ||||| | | || ||||| |||||||| || Sbjct 1583 AGTAAGCTTGCTAATGGTCGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAAT 1642 Query 133034 GAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGT 133093 | | | | ||||||| || | || || | | ||| ||||||||||| |||| Sbjct 1643 GTAGGCACCACGGTCAGCAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGT 1702 Query 133094 CTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTC 133153 |||| | | |||||| | | || || | | ||||||||||| || || Sbjct 1703 CTTGTACTTGTCCTTGACGTTGTCAGGGATGGATTTCACCTTCTGCACGGAACCACCGTC 1762 Query 133154 GGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGAC 133213 | || |||| |||||||| || || || | ||| | || ||||| ||| | | | Sbjct 1763 GTTCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCAT 1822 Query 133214 GAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACA--TT 133270 || |||| ||| || | | || ||||| ||||| || || || | || | |||| || Sbjct 1823 CAGGTACTTGTTCACGATCGTG-AACTCACCGGCAAGCACACGGC-GA-TTGTACATGTT 1879 Query 133271 CGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGG 133330 ||||||| |||| |||| || || |||||||| || ||||| || || | ||||| || Sbjct 1880 CGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGG 1939 Query 133331 CATGTACGCCACCA 133344 |||| ||||||| Sbjct 1940 CATGGGGGCCACCA 1953 >seq355 Length=43175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 42377 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 42436 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 42437 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 42496 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 42497 ATCTGCATG 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433808082272932