Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq313 156 3e-33 seq355 136 3e-27 seq381 91.5 1e-13 >seq313 Length=34572 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| |||||||| | || || ||||| |||||||||||| | Sbjct 24958 CCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 24899 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 24898 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24839 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || || ||||| | | | | ||||| || | || || || Sbjct 24838 -ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24780 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 24779 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||||||| | || || ||||| || ||||||||| | Sbjct 24502 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24443 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 24442 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24383 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || || ||||| | | | | ||||| || | || || || Sbjct 24382 -ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24324 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| |||||| || ||||| || ||||| ||||| |||||||||||| Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATC 24275 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||||||| | || || ||||| || ||||||||| | Sbjct 24730 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24671 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 24670 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24611 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || || ||||| | | | | ||||| || | || || || Sbjct 24610 -ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24552 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24504 >seq355 Length=43175 Score = 136 bits (150), Expect = 3e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || ||||||||| || || ||||| | || | | Sbjct 42377 AGGCGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 42435 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| || || ||||||| ||||||||| ||||| || || || |||||||| Sbjct 42436 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 42495 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 42496 GATCTGCAT 42504 >seq381 Length=39271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||||||| | || || ||||| ||||||||||| ||| Sbjct 34434 CCACCGCGAAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 34375 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 34374 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 34322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323055380065760