Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq313 156 3e-33 seq355 123 2e-23 >seq313 Length=34572 Score = 156 bits (172), Expect = 3e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||| ||||||||| ||||||||| |||||||||||| |||| ||| |||| || Sbjct 24941 TACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 24882 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 24881 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 24822 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||||| || | | |||| |||||| |||| || |||||||| Sbjct 24821 AATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 24762 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||||||||||||| ||||| |||||| Sbjct 24761 GCCCGTCAGAGTCTTCACGAAGATCTGCATG 24731 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | | ||||| ||||||||| ||||||||| || ||||||||| | Sbjct 24503 GCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCT 24444 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || ||||| |||| ||||| ||||| || || Sbjct 24443 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24384 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| ||||| || | | |||| |||||| Sbjct 24383 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24324 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| || |||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTTG 24272 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | | ||||| ||||||||| ||||||||| || ||||||||| | Sbjct 24731 GCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCT 24672 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || ||||| |||| ||||| ||||| || || Sbjct 24671 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24612 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| |||||| ||||| || | | |||| |||||| Sbjct 24611 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24552 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || |||||||||||||||||||||||||| ||||| |||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24503 >seq355 Length=43175 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 42315 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 42374 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||| ||||| || Sbjct 42375 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 42434 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || |||||||||||||| |||||||||| Sbjct 42435 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 42494 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 42495 AGATCTGCATG 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395054875973641