Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq898 168 1e-36 seq150 156 6e-33 >seq898 Length=32307 Score = 168 bits (186), Expect = 1e-36 Identities = 417/627 (67%), Gaps = 13/627 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | ||||||||||| ||||| |||||||| | ||| || | ||||| || | Sbjct 19227 ACATGAGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGA 19168 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | |||| || ||||| ||||| ||||| || ||||| || | || ||| || || | Sbjct 19167 AGCTGAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCG 19108 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-----ACTGGC 50126 | |||||||| || || || | |||||| || | || | ||| || || | Sbjct 19107 AGAAGAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC 19048 Query 50127 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 || | || | | |||||| | ||||| | ||| ||||| | || || || ||||||| Sbjct 19047 GCGGGTC--GCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTT 18991 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || ||| | ||| | ||| || || | || || | || || || || | | Sbjct 18990 CGATAGCACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCA 18931 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 | || | ||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 18930 GCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAG 18871 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCC 50363 |||||| | |||||||| | | || ||||| || | ||| ||||| || || || Sbjct 18870 CCTCGGGCACTTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTCTCATTGACGATGCC 18813 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 ||||||||| || || || || | || || || || || || |||||| || || Sbjct 18812 GTCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAG 18753 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 || ||| || |||| || | | || | || || | ||||| || || || Sbjct 18752 CTTCGCCCAGTCGTTGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGC 18693 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 ||| ||||| || ||||| | ||| | ||| || | ||||| ||||| | || || | Sbjct 18692 CTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCG 18633 Query 50544 ATTTGGATTTGGTGCAAGGATCGGTTC 50570 || ||||| || | |||| ||| || Sbjct 18632 GTTCGGATTCGGGACGAGGAACGGCTC 18606 >seq150 Length=92316 Score = 156 bits (172), Expect = 6e-33 Identities = 393/589 (67%), Gaps = 15/589 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | || ||||| ||| ||||| |||||||| | || || || || || || | Sbjct 91468 ACATGAGGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGA 91409 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| |||||||| ||||| ||||| || ||||| || || || ||| || || || Sbjct 91408 AGCTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAAGGAGCCC 91350 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA-----ACTGG 50125 || |||||||| || || || ||||||||||| | || | ||| || || Sbjct 91349 GAGAAGAAGATCCCCTCCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACA 91290 Query 50126 CGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 ||| ||| | | |||| | | ||||| | || ||||| | || || || || || Sbjct 91289 CGCGGGTC--GCA-CCACCTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTC 91233 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || |||||| | || | || || || || || || | || || || || | Sbjct 91232 TCGATGGCACGCAGCAGGTGGTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGC 91173 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 || || | ||||| || ||||| || ||||| ||||| || |||||||| || | | Sbjct 91172 AGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGA 91113 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTC 50362 ||||| | | ||||||||| | | || ||||| || | || || ||||| || | Sbjct 91112 GCCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATAC 91055 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 |||| ||||| ||||| || |||| || || || || || || |||||| || | Sbjct 91054 CGTCGCTGGCAGCAAAGAAAGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGA 90995 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | || ||| ||||||| || | | || | || || | ||||| || || | Sbjct 90994 GGTTCGCCCAGTCATTGAGGTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGG 90935 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 |||| ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 90934 CCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 90886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718230902342440