Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq58 114 9e-21 >seq58 Length=69883 Score = 114 bits (126), Expect = 9e-21 Identities = 322/492 (65%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| |||||||| ||||| | ||| || ||||| || || || | |||| Sbjct 49450 AGCTGCTTCTGAAGCGGTTCCACGTGGTTCAGATACACGTGTGCATCGCCTATGACGTGG 49391 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 | |||||| || || | || || || || | || | | ||| || || |||| Sbjct 49390 ATAAACTCGCCAGGCTTCAGTCCAGTCACCTGCGCTACTAGTCGCGTTAGAAGCGCGTAG 49331 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||| ||||| || || || |||| |||||||| | || | |||||| | ||| || Sbjct 49330 CTGGCAATGTTGAAAGGGACGCCGAGTCCCATGTCGGCA-GAGCGCTGGTACATCTGGCA 49272 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| ||||| |||||||||||| || | ||| ||| || || || || || Sbjct 49271 AGACAACTCCCCGTCGGCCACGTAAAACTGGCAGAACATGTGGCATGGTGGCAGCGCCAT 49212 Query 25653 AAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGT-CTTCTGGGTTGT 25711 | | || |||||||| || | | | || | | || | || || | || Sbjct 49211 CTCGTTGAGATCAGCTGGGTTCCACGCAGAGAGCACAATCCGGCGGTCCGTCGGGTTCGT 49152 Query 25712 -----CCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 25766 | || || || | | | ||||| ||||| ||| || |||||| Sbjct 49151 ACGCAGCTTGTGAATCACCTCAGCG------AGCTGGTCCACGCCCTGACCACTGTAGTC 49098 Query 25767 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCC 25826 || ||| | |||||||| || ||||| | | ||||||||| |||||||||||||| Sbjct 49097 CGCATGCATATTCGTGTACTTGGCACCGAAGTGACGCCACTGGAAGCCGTACACCGGTCC 49038 Query 25827 TAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATT 25886 ||||| ||| |||||| | || | || | | |||| | | || | || ||||| Sbjct 49037 GAGGTCGCCAACTTCCCGATCCTGCAGTCCTCGACTGTCCAGATACTCGCGCGATCCATT 48978 Query 25887 GGCGTCCCAGAT 25898 | |||||||||| Sbjct 48977 GCCGTCCCAGAT 48966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340120102152633