Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq290 150 3e-32 seq523 145 1e-30 seq216 127 3e-25 seq458 95.1 2e-15 seq2128 80.6 4e-11 >seq290 Length=69454 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 45511 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 45452 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || || ||||| || || |||||| |||| || || |||| || |||| Sbjct 45451 CCGTCGTCTCGCACGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 45392 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 45391 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 45332 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 45331 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGG 45272 Query 16672 CCG 16674 ||| Sbjct 45271 CCG 45269 >seq523 Length=29033 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 26432 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 26491 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || |||||||| |||| || | |||| || |||| Sbjct 26492 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 26551 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| || |||| || | || ||| ||||| Sbjct 26552 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAATGTCATCCGCGACTCGGTCACCTACACCGA 26611 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || ||||| || ||||||| |||| || || | || || || || Sbjct 26612 GCACGCTCGCCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGG 26671 Query 16672 CCG 16674 ||| Sbjct 26672 CCG 26674 >seq216 Length=63672 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| ||||| || |||||||| || ||||||||||| || || Sbjct 47274 CGCTAAGCGTCACCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 47333 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| || || || |||||||| || || || |||| || | |||| || |||| Sbjct 47334 CCGTCGACTCGCGCGCCGTGGTGGCGTGAAACGCATCTCCGGTCTCATCTACGAGGAGAC 47393 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| |||||||| ||| ||| |||| || | || || || || Sbjct 47394 TCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 47453 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || ||||||| |||| || || | || || || || Sbjct 47454 GCACGCGCGGCGCAAGACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGGG 47513 Query 16672 CCG 16674 ||| Sbjct 47514 CCG 47516 >seq458 Length=28093 Score = 95.1 bits (104), Expect = 2e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || | ||| |||||||||||||||||| | | ||||| | || ||||| || | | Sbjct 4768 CTACGCGCTAATATCCAAGGAATCACCAAGGCTTCAATCCGCAGGCTTGCTCGGCGAGCT 4827 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| | ||| | ||||| ||||| ||| | || | | ||| || | ||||| || Sbjct 4828 GGAGTGATCCGTATGTCTGGCTTGGTGTATCACGAAACTGGTGCCGTAATAAAGATTTTT 4887 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || ||| | |||| | ||| || ||||||| || || ||||| ||| Sbjct 4888 GTATAAAATCTTGTCCGCGCTGCTGTTGTCTACACGCAGCACGCGAATCGGAAGACAGTC 4947 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || || || | || || || ||||| | | | || || || ||| Sbjct 4948 ACCACAATGGATGTTGTATACGCTCTCAAGCGCCAGGGCCGCACGCTATACGGATTCGGA 5007 >seq2128 Length=3791 Score = 80.6 bits (88), Expect = 4e-11 Identities = 176/260 (68%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAG-ATAACATCCAAGGAATCACCAAGCCAGCT 16489 ||| ||||| || ||| | ||| || || | |||| || |||||||| | || || | Sbjct 538 CGCGAAGCGCCACCGCTACATC-CTACGGGGATAATATTCAAGGAATAAGCAGACCGTCC 480 Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||||||||| |||| || | | |||| || | || | | ||||| || Sbjct 479 ATCCGTCGTCTTGCTCTGCGGGAAGAGGTCATCCGCATGTCCGACGTTATCTATAGCGAA 420 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | ||||| ||| ||||| | || |||| | | |||| | ||||| | ||| | Sbjct 419 ACTCGTGCGGTTCTGAAGGTATTTGTCAAAAACCTTATTCGAGATGCGGTGGTCTACGCA 360 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||| || || || ||||| ||||| || | |||| | || |||||| | || | ||| Sbjct 359 GAGCATGCCAACCGAAAGACAGTCACGTCGAGGGATGTTGTGTATGCACTAAACCTCCAA 300 Query 16670 GGCCGTAAGATTTATGGTTT 16689 ||||| | | |||| || || Sbjct 299 GGCCGAACGCTTTACGGGTT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071340710153