Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq898 134 2e-26 >seq898 Length=32307 Score = 134 bits (148), Expect = 2e-26 Identities = 405/620 (65%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | ||||||||||| ||||| |||||||| | ||| || | ||||| || | Sbjct 19227 ACATGAGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGA 19168 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| ||||| ||||| || ||||| || | || || || || | Sbjct 19167 AGCTGAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCG 19108 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33470 | |||||||| || || || | ||||| || | || | ||| || || | Sbjct 19107 AGAAGAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC 19048 Query 33471 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 || | || | | |||||| | ||||| | ||| ||||| | || || || ||||||| Sbjct 19047 GCGGGTC--GCA-CCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTT 18991 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | || ||| | ||| | ||| || || | || || | || || || || | | Sbjct 18990 CGATAGCACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCA 18931 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 | || | ||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 18930 GCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAG 18871 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCC 33707 |||||| | || ||||| | | || |||| |||| ||| ||||| || || || Sbjct 18870 CCTCGGGCACTTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTCTCATTGACGATGCC 18813 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 ||||||||| || || || || | || || || || || | |||| || || Sbjct 18812 GTCACTGGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAG 18753 Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 || ||| || |||| || | | || | || || | ||||| || || || Sbjct 18752 CTTCGCCCAGTCGTTGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGC 18693 Query 33828 CTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 ||| ||||| || ||||| | ||| | ||| | | ||||| ||||| | || || | Sbjct 18692 CTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCG 18633 Query 33888 ATTTGGATTTGGTGCAAGGA 33907 || ||||| || | |||| Sbjct 18632 GTTCGGATTCGGGACGAGGA 18613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622914331748360