Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1255 322 1e-82 seq58 104 6e-17 >seq1255 Length=9666 Score = 322 bits (356), Expect = 1e-82 Identities = 878/1337 (66%), Gaps = 12/1337 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| || || || | | ||| || || || | ||| ||| |||| || Sbjct 3157 TTCACGCACGCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 3098 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||| ||||||| ||||||||||| |||| ||||| || ||| | Sbjct 3097 TGCTTCCTGCTGGCCATGCAGGACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 3038 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || ||||| || || | || ||||| | || || Sbjct 3037 TGCGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCC 2978 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| || ||||| || | || |||||| | | |||||||| || Sbjct 2977 ACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGGATCATCCCCATGCTGCGC 2918 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || ||| | ||||| |||||||| || || |||||||| || |||| Sbjct 2917 GTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTC 2858 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || ||||| | || ||||| || || ||||| || ||| Sbjct 2857 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAAC 2798 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||||||| || || ||||| | || | Sbjct 2797 CACGGCAACGAGCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCTC 2738 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | || ||| | | || ||| || || ||||| ||||| ||| Sbjct 2737 TTCATGAAGAGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCCC 2678 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | ||| ||||| ||||| | || || || ||||| ||||| || ||||| Sbjct 2677 GGACTGTACGAGTGCTGGGGGGACGAGTTTGAGGCCCTCTACGAGAAGTACGAGACGGAG 2618 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || ||| || ||||| ||| ||| ||| |||| ||||| |||||| |||| | ||| Sbjct 2617 GGCCGGGCCCGCAAGACCATTAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCCCAG 2558 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || |||| ||| ||||||| || || ||||||||||||||||||| Sbjct 2557 ATCGAGACGGGGGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACCAG 2498 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || || | ||||||| | || |||| | || || ||||| | Sbjct 2497 CAGAACCTGGGCACCATCCGCTCGAGCAACTTGTGCTGCGAGGTCATGGAGTACACGTCG 2438 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAA 364323 ||||| ||| || || || ||||| |||||| | || || || ||| || | Sbjct 2437 CCCGATGAGGTGGCGGTGTGCAACCTGGCGTCGGTGGCCCTGCCCAAGTTCGTGGAGGAG 2378 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || ||| || || ||||| | || || || || | | || |||| ||| Sbjct 2377 GACGGTGTGTTCAACTACCAGAAGCTGTACGAGGTGGTAAAGGTGGTGACCCGCAACCTC 2318 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCG 364442 ||||||| || || || || || || | | | || || || || || ||||| Sbjct 2317 AACAAGGTGATTGATGTCAACTACTACCCCGTGGC-GGAGGCGCGCAAGTCCAACATGCG 2259 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 || |||||| | || | ||||| ||||| || || |||| || || || | || Sbjct 2258 CCACCGCCCGGTGGGGATCGGTGTGCAGGGTCTGGCCGACGCGTTCATTCTGATGAACTA 2199 Query 364503 GGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || || || || | | ||||||| || || | | | ||||| || || || || | Sbjct 2198 CGCGTTCGA-GAGCGAGCAGGCTCGTGAGCTCAACATGAACATCTTCGAGACCATCTACT 2140 Query 364562 TTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 || | ||| | ||| || | || || || |||| || | Sbjct 2139 ACGCTTCCATGGAGACGTCGATGGAGATCGCCAAGGAGCTTGGCCCGTACGAGACGTTCC 2080 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 |||| || ||| |||| | |||||||| || | ||| ||||||| || | Sbjct 2079 AGGGATCGCCTGCCAGCAAGGGTATCTTCCAGTTCGACATGTGGGGCATCACGCCTTC-G 2021 Query 364682 TC----CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 || | |||||||||| | |||| ||||| | || || || | ||| ||| Sbjct 2020 TCGGGTCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTGATTAAACACGGAATTCGGAAC 1961 Query 364738 TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAG 364797 || || | || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 1960 TCGCTTCTGGTGGCCCCCATGCCTACGGCTTCTACTGCTCAGATCCTGGGCAACAATGAG 1901 Query 364798 TGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCG 364857 | | |||| |||| || || | || ||||| || ||| |||| || || || Sbjct 1900 TCCATCGAGCCGTACACGTCGAACATGTACAATCGCCGTGTGCTTGCCGGTGAGTTCACG 1841 Query 364858 GTAGTTAATAAGTACCT 364874 | || || |||||||| Sbjct 1840 ATCGTGAACAAGTACCT 1824 >seq58 Length=69883 Score = 104 bits (114), Expect = 6e-17 Identities = 387/598 (65%), Gaps = 14/598 (2%) Strand=Plus/Plus Query 111359 CGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-A 111417 ||| || || |||||||| ||| ||||| |||| || | | |||||||| || | Sbjct 48899 CGAGGAGCTGCTGTGGTTCATTAGCGGAGACACAAGCGCTCAC-ACGTTGCAGCAGAAGA 48957 Query 111418 ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG--GTCTTGT 111475 | | | || ||||| || |||||||| || || | ||| || |||| | | || Sbjct 48958 ACATTCACATCTGGGACGGCAATGGATCGCGCGAGTATCTGGA--CAGTCGAGGACTGCA 49015 Query 111476 CGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGC 111535 || |||| || || |||||||| || ||||| || || ||||| ||||| ||||| Sbjct 49016 GGATCGGGAAGTTGGCGACCTCGGACCGGTGTACGGCTTCCAGTGGCGTCACTTCGGTGC 49075 Query 111536 AGACTACAAAACCATGCACG---ACTCATATGATTCACAGGGAACTGATCAATTACAGAA 111592 | |||| | ||||| | ||| || | ||||| || || | | Sbjct 49076 CAAGTACACGAATATGCATGCGGACTACAGTGGT---CAGGGCGTGGACCAGCTCGCTGA 49132 Query 111593 TGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 || ||| | ||| | | || ||||| || || || ||| | | ||| |||| Sbjct 49133 GGTGATTCA-CAAGCTGCGTACGAACCCGACGGACCGCCGGATTGTGCTCTCTGCGTGGA 49191 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG 111711 ||||| || | | | ||||| || |||||||| || | | ||||||||||| | Sbjct 49192 ACCCAGCTGATCTCAACGAGATGGCGCTGCCACCATGCCACATGTTCTGCCAGTTTTACG 49251 Query 111712 TACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTG 111771 | ||||||| | | || ||||| ||||| ||||| ||||| || || || || || | Sbjct 49252 TGGCCGACGGGGAGTTGTCTTGCCAGATGTACCAGCGCTCTGCCGACATGGGACTCGGCG 49311 Query 111772 TTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATC 111831 | || || || ||||| || ||||| || || || | || | || || | || | Sbjct 49312 TCCCTTTCAACATTGCCAGCTACGCGCTTCTAACGCGACTAGTAGCGCAGGTGACTGGAC 49371 Query 111832 TCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTG 111891 | || || || || || || ||||| || || ||||| || || || |||||| | | Sbjct 49372 TGAAGCCTGGCGAGTTTATCCACGTCATAGGCGATGCACACGTGTATCTGAACCACGTGG 49431 Query 111892 ATGCACTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 | | ||| | | ||| | | ||| ||| | ||||| || |||||||||| Sbjct 49432 AACCGCTTCAGAAGCAGCTAACGCGGGCACCGCGCTCGTTCCCGACACTTCATATCAA 49489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303283112600822