Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1255 271 7e-68 seq313 138 1e-27 seq381 114 1e-20 seq355 104 2e-17 >seq1255 Length=9666 Score = 271 bits (300), Expect = 7e-68 Identities = 953/1463 (65%), Gaps = 55/1463 (4%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| | ||||| ||||| | |||||| || |||| ||| ||||| Sbjct 1826 GTACTTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGT 1885 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | | || || | ||||| || ||||||||||| ||||| || | || || |||||| Sbjct 1886 GTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGG 1945 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||||||| | || || || | ||||| || | | || ||||| |||| | |||| Sbjct 1946 GGCCACCAGAAGCGAGTTCCGAATTCCGTGTTTAATCACGTTCTCCTTCAGCGCAGCCCA 2005 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 | ||| || ||| | ||| | | | ||||||||||| |||| || || |||| ||| Sbjct 2006 GTTCCACAGACCCGACGAAGGCGTGATGCCCCACATGTCGAACTGGAAGATACCCTTGCT 2065 Query 145288 GGCGGG-GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACT 145344 ||| || | | ||| ||| | | ||| ||| ||| | ||||||| ||| || | Sbjct 2066 GGCAGGCGATCCCTGGAACGTCTC-GTACGGGCC--AAGCTCCTTGGCGATCTC-CATCG 2121 Query 145345 -CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||||| | || | || || |||||| || | | |||||||| || | Sbjct 2122 ACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATGTTGAGCTCACGAGCCT 2181 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 ||||||||| ||| | || ||| | || || ||||| || ||||| | || | Sbjct 2182 GCTCGCTCTCGAACGCGTAGTTCATCAGAATGAACGCGTCGGCCAGACCCTGCACACCGA 2241 Query 145464 CGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTA 145522 || | || || || ||||||| | | | |||| | | | || || | | | | Sbjct 2242 TCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAGTAGTTGA 2301 Query 145523 CGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCA 145582 | || || | || || | ||| || || |||||| | | || ||| | Sbjct 2302 CA-TCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCACCTCGTACAGCTTCTGG 2360 Query 145583 AAGT----CAAACCGAGCCTCGTCAACGACCACACAGCTATTG---ACGGCGATCGACGC 145635 ||| || |||| |||| || |||| | ||| | ||| | |||||| Sbjct 2361 TAGTTGAACACACCGT-CCTCCTCCACGAAC---------TTGGGCAGGGCCACCGACGC 2410 Query 145636 CAAATTACAAACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCGCACAAAT 145694 || || || || ||| ||| |||| || || |||| | | || |||| |||||| | Sbjct 2411 CAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATGACCTCGCAGCACAAGT 2469 Query 145695 TGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGT 145754 |||| | |||||| ||||| || ||||| || || | |||| ||||||||||| Sbjct 2470 TGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGT 2529 Query 145755 AGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TC 145812 | |||||| | || | || ||||| | ||| | |||| ||| || || || | Sbjct 2530 ACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGG--CGAACCACAGCTG 2587 Query 145813 CTGCGC----ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCT 145868 ||| || | | | ||| || |||||||| ||||| ||| |||||| Sbjct 2588 CTGGGCGTTAATGGTCTTGC----GGGCCCGGCCCTCCGTCTCGTACTTCTCGTAGAGGG 2643 Query 145869 CCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCG 145928 |||||||| || || |||| ||| |||| |||||| | |||||| || | ||| Sbjct 2644 CCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGGC 2703 Query 145929 ACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACA 145988 |||| ||| |||| | ||| | || ||| || | ||| || ||||| |||||||| | Sbjct 2704 TCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAGA 2763 Query 145989 TCAAGTCGCGCGCTT--TGCAATCCTCAGCACCCATGTTTCGCTTCAAATT--AAGCACA 146044 || ||||||||| |||| ||| | || || ||| | | | | || Sbjct 2764 ACAGGTCGCGCGCCCGGTGCAG--CTC-GTTGCCGTGGTTCTTGCGGAGGTCCAGGAACT 2820 Query 146045 CTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTGCCA 146104 | | | | ||| ||||||||||| || | |||| ||||| | || || || ||||| Sbjct 2821 CGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCG 2879 Query 146105 CC---CTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCG 146161 || ||||||||||| || || ||| ||| || ||||||| |||||| || || Sbjct 2880 CCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCA 2939 Query 146162 CTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTC 146221 ||| ||||||||| || | || | || ||| | | || | | Sbjct 2940 TTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTG 2999 Query 146222 ACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATG 146281 | ||||| |||||| | ||||||| || ||||| | |||||| ||||||||| Sbjct 3000 ATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATG 3059 Query 146282 CCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGC 146341 || || ||| ||| | ||| | ||||| |||||||| ||| ||||| |||| Sbjct 3060 CCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGC 3119 Query 146342 GTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGA 146401 || || || ||| | ||| ||| |||||||||| || | || ||||||| | | Sbjct 3120 GTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAGCTCG 3179 Query 146402 TACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGC 146461 ||||| |||| ||| | || |||||| | || ||||||| || |||||||||| | Sbjct 3180 TACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGCCACGCGCATGATC 3239 Query 146462 ATGTGTTGGGGCCGCTCCGCCAC 146484 || || || ||||||||| |||| Sbjct 3240 ATCTGCTGCGGCCGCTCCACCAC 3262 >seq313 Length=34572 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||| || | || | ||||||||||| || || ||||| ||||| Sbjct 24731 GCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCT 24672 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 24671 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24612 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||||||||||| | | || | | || | | ||| | Sbjct 24611 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24552 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || ||||| || ||||| ||||||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24503 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||| || | || | ||||||||||| || || ||||| ||||| Sbjct 24503 GCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCT 24444 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 24443 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24384 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||||||||||| | | || | | || | | ||| | Sbjct 24383 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24324 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || ||||| || ||||| |||||||| Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24276 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || | || | ||||||||||| || |||||||| |||||| Sbjct 24958 CCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 24899 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 24898 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24839 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 24838 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 24779 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || ||||| || ||||| ||||||||| Sbjct 24778 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24731 >seq381 Length=39271 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 34434 CCACCGCGAAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 34375 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 34374 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 34315 Query 131128 ATTCCT 131133 |||||| Sbjct 34314 ATTCCT 34309 >seq355 Length=43175 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 42315 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 42374 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 42375 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 42434 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 42435 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 42494 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 42495 AGATCTGCATGA 42506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471987895424640