Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq355 105 6e-18 seq313 91.5 1e-13 seq1255 86.0 5e-12 >seq355 Length=43175 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 42504 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 42445 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || ||||||||||| || || || || || Sbjct 42444 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 42385 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 42384 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 42325 Query 22399 ATTCAAAA 22406 || || || Sbjct 42324 ATCCAGAA 42317 >seq313 Length=34572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || ||| | || || || ||| |||| || || ||||| | Sbjct 24273 AAGATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCG 24332 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | | || || |||||||| ||||||||||| || || || || Sbjct 24333 TCGGACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGAC 24392 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | ||||| |||||| | ||| ||| Sbjct 24393 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 24452 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || || | || | || |||| ||||||| || Sbjct 24453 AATATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGG 24502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 24732 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24791 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || |||||||| ||||||||||| || || || || || Sbjct 24792 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24851 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | ||| |||||| Sbjct 24852 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 24911 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || |||| |||| || ||| Sbjct 24912 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGTGGCGGT 24959 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 24504 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24563 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || |||||||| ||||||||||| || || || || || Sbjct 24564 GACTCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 24623 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | ||| ||||| Sbjct 24624 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAT 24683 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 24684 ATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGCGGTGG 24730 >seq1255 Length=9666 Score = 86.0 bits (94), Expect = 5e-12 Identities = 265/402 (66%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 129997 CTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | |||| | ||||| | ||||| || | |||||| ||||| || ||||| Sbjct 2703 CTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAG 2762 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAAT 130114 |||| || ||||| |||| || ||| || | || || ||||| | Sbjct 2763 AACAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTC--TTGCGGAGGTCCAGGAACT 2820 Query 130115 CGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GC 130171 || | | ||||||||||||||| || | || || || | | |||||| || || || Sbjct 2821 CGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGC 2880 Query 130172 CCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGT 130231 | || ||||| |||| |||| | | | |||| | || |||| ||| | | || | Sbjct 2881 CGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCAT 2940 Query 130232 TGGCCGTGCCGTTTGTGCTCTC-AATGAAACTGCCACGAGCCCGAACGTTATGAACGCTT 130290 ||| || |||||| |||| ||| ||| | ||| || || | ||| || | ||| Sbjct 2941 TGGACGAGCCGTTCGTGC-CTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTG 2999 Query 130291 AGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAAT 130349 | || ||||||||| | | || || || ||||||| | || | ||||| || || || Sbjct 3000 ATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAGAT 3058 Query 130350 GCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 ||| |||| ||| || | ||| || ||||| ||||| Sbjct 3059 GCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGA 3100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419706407748865