Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq467 143 6e-29 seq898 116 8e-21 seq150 104 5e-17 >seq467 Length=26389 Score = 143 bits (158), Expect = 6e-29 Identities = 673/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || ||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 13266 CTCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCGAG 13325 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 13326 GTGAGACTCAATGTGGTGGAATGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 13385 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| | ||||| |||| ||| || | ||| Sbjct 13386 CTTCCACACCTGACCACTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATAGTCGA 13445 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT- 333552 || || ||||| || ||| | ||| | || | | ||| | | | ||| Sbjct 13446 CTTACCGGCACCGTTGGGGCCCAGCACGGCGATACGGCT------CGAAAGC-GCGCACG 13498 Query 333553 TCAC------GTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 |||| ||||| | | || || ||||| |||| | || || | Sbjct 13499 TCACCGAGATGTTGTTGATCGACGGCTTGGGGGTTCCCGGGTACTGGTACGAG-CAGTTC 13557 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| ||||| | | ||||| || ||||| ||| Sbjct 13558 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCCGGG 13617 Query 333666 AACTTC-----CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 333720 ||| | ||| | ||| || |||| || ||||||| | | || || Sbjct 13618 AACGTGAACTTCACATTGTC--CGACTCG---AGCTCGTAGTACGCCTTGGCCTCAGGCT 13672 Query 333721 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 333780 || || |||||||||||| || || |||||||| |||||||||| || | |||| Sbjct 13673 TCTGCTCCACGAACTCGGAGAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCGT 13729 Query 333781 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840 | || || || |||||| || | ||||||||| || |||||||| ||||| || | Sbjct 13730 AGTGAATGATGTTGGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATCG 13789 Query 333841 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAA 333900 | | |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 13790 AGGTCACGTTCGGCAGGCTCGTCAGGTAATTCTCCAGCCAGGCGACGTTCTTGACATCCA 13849 Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 333960 ||||| |||||||| ||||| || || | | || ||| | ||||| ||||| || | Sbjct 13850 AGTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCA 13909 Query 333961 GAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 334020 | | |||||||| ||||| || || ||||||||| | || ||| || | Sbjct 13910 GCTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCCA------CACCCTGGGCCTGCA 13963 Query 334021 TATCA------AAGCCAACCGATTCTAGAGTAGTTAC-GATCTTTTCACGAGACCAAATG 334073 | ||| ||||| || | || || || | | || ||||||| || Sbjct 13964 TCTCAGGGGTGAAGCCCACGCTGCCGAGGGT-GTCCCTAACCTCGTCACGAG-----GTG 14017 Query 334074 TTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 | || ||| | | |||||| |||||||| | | | || | || || || Sbjct 14018 TGTT-CTTCAGGTCCTCATCAACAAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGAA 14076 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTC 334192 | | || | ||| || ||| | ||||||||| | | ||| | |||||| || || Sbjct 14077 GCCTGCAGGTTGTGCTCAACGAACACAGTTTTCAGCTCGT-CGCGGCTGGGGAAGCCCTC 14135 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 ||||| || || || ||||||||||| || || ||||| || || || || || Sbjct 14136 GAGCTGGCCATTGGAGATGGCGCGCATCAGGGTCGACTTACCACAACCATTGGGACCGCA 14195 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 ||||||||| |||| |||||||| || | || | |||||||| ||||| | || Sbjct 14196 CAGACCGTAACGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACC 14255 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||| || || || || || || || | ||||| || Sbjct 14256 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 14291 >seq898 Length=32307 Score = 116 bits (128), Expect = 8e-21 Identities = 550/860 (64%), Gaps = 18/860 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| |||||||| | ||| |||| ||| Sbjct 18645 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGG 18704 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||| | ||| ||| ||| || ||||||| | ||| |||| || Sbjct 18705 ACGGCCGAGGAGCTCGACCTGGT-GCACGACCTCAACGACTGG---GCGAAGCTCACGGA 18760 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | |||| || || |||||||| ||| | || | || ||||| | | || || || || Sbjct 18761 CAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGACGGCATCGT 18820 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 | || |||||| | ||||| || ||||| || || ||||| || || Sbjct 18821 CAATGAGAATCTGGCCATGAACTTCAGCAACGAAGTGCAAGTGCCCGAGGCTCGCTGCTT 18880 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | || ||| | || ||| ||||| || || || | || || || || Sbjct 18881 CTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 18940 Query 243174 CGCGCTTATTTCAGATGA-ACAAGAGCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | || || ||| | || || | ||| || | || | || ||||||| || Sbjct 18941 CACG--TACATCA-AGGACACCGTGGAGAAGAACCACCTCCTGTGTGCTATCGAAACGAT 18997 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCATT 243290 ||| || || || || || || ||||| | |||||| || || || || | Sbjct 18998 CCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTGTCGTC 19057 Query 243291 TG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTT 243347 | |||||||| | || | | | || || || || | || || || || Sbjct 19058 CTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTT 19117 Query 243348 CTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| | |||| ||||| ||| || | |||||||| ||| | | || ||||| Sbjct 19118 TTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTCGAACGA 19177 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 | | |||||||||||||||||| | ||| | |||| || ||||| || ||||| Sbjct 19178 GATGATCAGTCGCGACGAGGGCATGCACACGGATTTCGCATGCCTCATGTACTCCAAGCT 19237 Query 243468 CCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACG 243526 ||||||||| || || || ||| | | ||| | || || || | | | Sbjct 19238 GGTGAACAAGCTGCCGGA-GAGCCGAGTCCACGAGATCGTGCGCGACGCTGTGAAGATTG 19296 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCA 243586 | | || ||| | |||||| | | || ||| || ||||||||||| |||| Sbjct 19297 AGCACGAGTTCGTCTGCGACTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCA 19356 Query 243587 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG 243646 || | ||||||||||| ||||| || ||||| | | | |||| ||| || ||| Sbjct 19357 TGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTCGCTGGGTG-TGTCCAAG 19415 Query 243647 -TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | |||||| ||||||||| || | || ||||| | || ||||| || || || || Sbjct 19416 ATCTACAACGTCAAGAACCCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACC 19475 Query 243706 AACTTCTTCGAAAAGCGTGT 243725 ||||||||||| | |||||| Sbjct 19476 AACTTCTTCGAGAGGCGTGT 19495 >seq150 Length=92316 Score = 104 bits (114), Expect = 5e-17 Identities = 550/863 (64%), Gaps = 24/863 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| |||||||| | ||| |||| ||| Sbjct 90886 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGG 90945 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || ||||||| | || || ||| ||| || |||||| | ||| |||| | Sbjct 90946 ACGGCCGAGGA-GCTCGACTTGGTGCACGACCTCAATGACTGG---GCGAACCTCACGAA 91001 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | |||| ||||| |||||||| ||| | || | ||| || || | | ||| ||||| || Sbjct 91002 CAACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGT 91061 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || ||| | ||||| || ||||| ||| || ||||| || || Sbjct 91062 GAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCTCGCTGCTT 91121 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||| | || ||| ||||| || || || | || || || || Sbjct 91122 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 91181 Query 243174 CGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACATT 243231 | || || ||| || | ||| || | || | |||||||| | ||| Sbjct 91182 CACG--TACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAGACCATC 91239 Query 243232 CCG-GCGGTTCAT-AACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCAT 243289 ||| ||| ||| || || || | ||||| | | |||| || || || || | Sbjct 91240 CCGTGCG--TCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGCGTGTGTCCT 91297 Query 243290 TTG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | |||||||| | |||| | ||| || || || | || || || | Sbjct 91298 CCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCT 91357 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||||| | ||||| ||||| ||| || | ||||| || ||| | | || || | Sbjct 91358 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATG 91417 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 || ||||||| || ||||||||| | ||| | |||| | || ||||| || |||| Sbjct 91418 AGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCTTGCCTCATGTACTCCAAGC 91477 Query 243467 TCCAGAACAAGCTACCATTCGAAA--CG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 | |||||||| || |||| || || | | || | || || || | | Sbjct 91478 TGATCAACAAGCTGCCG---GAAAGCCGCGTGCACGAGATTGTGCGCGACGCTGTGGTGA 91534 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || | || ||| | ||||| | | || | | || || |||||||| | | Sbjct 91535 TTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGAACTCGGGGC 91594 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 ||||| | || |||||||| ||||| ||||||||| | | | |||| || || Sbjct 91595 TCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGCG-TGTCT 91653 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| | |||||| |||||||||| || | || ||||| | || ||||| || || || Sbjct 91654 AAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 91713 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||||||||| |||||||| Sbjct 91714 ACCAACTTCTTCGAGAAGCGTGT 91736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102820354526350