Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1255 246 4e-60 seq150 158 1e-33 seq898 156 5e-33 seq368 89.7 6e-13 >seq1255 Length=9666 Score = 246 bits (272), Expect = 4e-60 Identities = 906/1395 (65%), Gaps = 53/1395 (4%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || || | |||||| ||||| | | |||||||||| |||| ||| || || || || Sbjct 1872 TACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 1931 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGTTC 114060 || || |||||||| |||| ||||| ||| || | || | || |||| ||||| Sbjct 1932 GCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTT---TAATCACGTTC 1988 Query 114061 --CTTGAGGGCGTCCCAGT--CGTAGTTGAG-CTTTGTC----TCCCCCTGCCACATATC 114111 ||| || || |||||| | || | | | | | |||| |||| || Sbjct 1989 TCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCC----ACATGTC 2044 Query 114112 AAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC 114171 ||||||| |||||| | | ||| |||||||||| || |||||||| ||||| || Sbjct 2045 GAACTGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC---AAG 2101 Query 114172 CTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCG 114228 |||| || | || || ||| | || |||| || || ||||| || ||| Sbjct 2102 CTCCTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTT 2161 Query 114229 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCA-CAAAATAAATACA 114286 || | | |||| ||| || |||||| ||| || || ||| || | Sbjct 2162 CATGTTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGTAGTT--CATCAGAATGAACGCG 2219 Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || ||||| || ||||||| || | ||||| || | ||| || ||||| || || Sbjct 2220 TCGGCCAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCC 2279 Query 114347 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 | ||||||| || | || ||| || ||| | || || || ||| || |||||| Sbjct 2280 TCCGCCACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTT 2339 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGG 114465 | || | ||||| | ||| | || || || || || | || |||| || Sbjct 2340 ACCACCTCGTACAGCTTCTGGTAGTTGAACACACCG----TCCTCCTCCACGAACTTGGG 2395 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 ||||| | |||||||| || ||||| | |||||| |||||||| || | Sbjct 2396 CAGGGCCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGAC 2455 Query 114526 TTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 || ||||| || ||| |||||||||| ||||| || || ||||| Sbjct 2456 CTCGCAGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCG 2512 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 ||| ||| |||||||| |||||| | ||| ||||||||| | |||| | || || Sbjct 2513 GTTGGCCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGAT 2572 Query 114643 AGCCTTCCAGACATCGGCGGCTGGCAC-AGTGGCGTTG---GCTCGCCCCTCCTCCTCGT 114698 || ||| || | || | ||| | ||| ||| || || |||||| ||||| Sbjct 2573 GGCGAACCA--CAGCTGCTG--GGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGT 2628 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 |||| ||||||||| |||||||| || ||| | ||| | || || || || | | Sbjct 2629 ACTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGT 2688 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 |||||||| || ||||| ||| ||| || | |||||||||||| || |||| Sbjct 2689 TGGGGCAGAACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGA 2748 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGC 114877 |||||| || |||| || || || || || || | | || || || || Sbjct 2749 CCCAGAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGG 2807 Query 114878 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 114937 | |||| || || | | || ||||||||||| |||||||| | |||| || ||| Sbjct 2808 AGGTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCC 2867 Query 114938 TTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATT 114994 || || | || |||||| || || | ||| ||| | || || ||||| ||||| Sbjct 2868 TTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATG 2927 Query 114995 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 115054 || ||||| |||| || ||| || || || || || || |||| | || Sbjct 2928 GGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATG 2987 Query 115055 TCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 115114 | || ||| || || || || || |||||||| ||||| |||||||| | |||| Sbjct 2988 TTGTGCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGC 3047 Query 115115 CTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATT 115174 || ||||||| || ||||| ||||| ||| | || | |||||||| ||||| Sbjct 3048 GTGTCGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGC 3107 Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 115233 || || | || || || ||||||||||| || || |||||||| |||| | || | || Sbjct 3108 TGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGA-ACTTCTG 3166 Query 115234 GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 115293 | ||| ||||| ||||| | |||| | ||||| || ||| || || | || Sbjct 3167 GCTCATGAGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGC 3226 Query 115294 GACCCGCATAAACAT 115308 || ||||| | ||| Sbjct 3227 CACGCGCATGATCAT 3241 >seq150 Length=92316 Score = 158 bits (174), Expect = 1e-33 Identities = 359/534 (67%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 91752 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 91693 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || |||||||| | ||| | || | | ||| || | | | || Sbjct 91692 GTCCATCCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAG 91633 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||| ||||| | |||| | | |||||||||||||| | Sbjct 91632 CAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAA 91573 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | ||||||| ||| | |||| | | |||||| |||| || || ||||| || Sbjct 91572 CTCCACCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAAT 91513 Query 125992 GGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA 126049 |||| | | | || ||| | | ||| || |||| |||| | |||| Sbjct 91512 CTCGTGCACGCGGCTTTCCGGCAGCT-TGTTGATCAG---CTTG--GAGTACATGAGGCA 91459 Query 126050 AAC----TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 | | || ||| | |||||||||||| |||||| ||||||||||||| || || Sbjct 91458 AGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACC 91399 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | || || || |||||||||||||| Sbjct 91398 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGAT 91339 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225 |||||||| || || || | |||||||| | ||||| | | ||| | Sbjct 91338 CCCCTCCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTCGCA 91279 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| | | |||||| || || || ||| || ||||||| ||||| ||| || Sbjct 91278 CCACCTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGC 91225 >seq898 Length=32307 Score = 156 bits (172), Expect = 5e-33 Identities = 394/591 (67%), Gaps = 15/591 (3%) Strand=Plus/Minus Query 125748 CCAGCTT-GCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||||| | ||| || || || ||| ||||||||||||| ||||| || | | | Sbjct 19516 CCAGCTTTGGAGTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAG 19457 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || ||||||||||| ||| | || | | ||| || | | Sbjct 19456 ATCATGTCCATCCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAG 19397 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | || ||||| || | ||| |||| ||||||| |||| | |||||||| ||| Sbjct 19396 TACAGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCG 19337 Query 125927 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGC 125986 || || | ||||||| ||| ||| |||| | | |||||| | ||| || || ||| Sbjct 19336 ATCAGCTCCACCGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGC 19277 Query 125987 ACGATGGCGTGAA-TGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC 126045 ||||| |||| | | | || | ||| | || || |||| |||| | Sbjct 19276 ACGATCTCGTGGACTCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATG 19223 Query 126046 -GGCA----AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 126100 |||| || || ||| | |||||||| || ||| | || |||||||||| Sbjct 19222 AGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTG 19163 Query 126101 AGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG 126160 || || |||||||| || |||||||| | |||||| | || ||||| || ||||||||| Sbjct 19162 AGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAG 19103 Query 126161 AAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGT 126219 ||||| |||||||| | || ||||| | |||||||| | |||| || || | Sbjct 19102 AAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCGG 19044 Query 126220 GTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| ||||||| | ||||| | || || |||| || ||||||| || | ||| || Sbjct 19043 GTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGC 18984 Query 126280 TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | ||| | ||||| || | || ||||||||| | || ||||| Sbjct 18983 ACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 18933 >seq368 Length=32231 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 ||||||||||| | || || || ||||| | |||||| || || ||||| |||||| Sbjct 15950 AGTTGCGCCACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCG 16009 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 || || ||||| ||||| || | ||| ||||| || || || | ||| || ||||| || Sbjct 16010 TACTGGTCACGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCT 16069 Query 172883 TCCGTCACGATGAGCGTACACT 172904 || |||| || |||| |||| Sbjct 16070 TCGGTCAAAATAAGCGAGCACT 16091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597322082130680