Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq313 100 3e-16 seq355 98.7 1e-15 >seq313 Length=34572 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || || || | |||||| || || || |||||||| || Sbjct 24959 ACCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 24900 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || ||||||||||| || | || || ||||||||||| || || Sbjct 24899 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24840 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 || || || || || || ||||| ||||| || || | | | | |||| |||| Sbjct 24839 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCA 24781 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||||| |||| ||| || ||||| || ||||| Sbjct 24780 CGTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || || | |||||| || || || || ||||| || Sbjct 24502 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24443 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| || | || || ||||||||||| || || Sbjct 24442 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24383 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || ||||| ||||| || || | | | | |||| ||||| Sbjct 24382 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCAC 24324 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| |||| ||| || ||||| || ||||| || Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 24273 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || || | |||||| || || || || ||||| || Sbjct 24730 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24671 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| || | || || ||||||||||| || || Sbjct 24670 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24611 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || ||||| ||||| || || | | | | |||| ||||| Sbjct 24610 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCAC 24552 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| ||| || ||||| || ||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24504 >seq355 Length=43175 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || || || || || || || ||||| ||||| ||| || Sbjct 42377 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 42436 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | ||||||||| |||| || || || | Sbjct 42437 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 42494 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 42495 AGATCTGCAT 42504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499618437491240