Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1255 228 8e-55 seq150 127 2e-24 seq898 116 4e-21 seq313 109 5e-19 seq355 100 3e-16 >seq1255 Length=9666 Score = 228 bits (252), Expect = 8e-55 Identities = 946/1463 (65%), Gaps = 57/1463 (4%) Strand=Plus/Plus Query 153018 ATCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACAT- 153075 |||| ||||| ||| || | | |||| ||| || || | ||| || | | | ||||| Sbjct 1821 ATCAGGTACTTGTTCACGATCGTGAA-CTCACCGGCAAGCACACGGCG--ATTGTACATG 1877 Query 153076 TGCTA-GTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 | | | ||| | || || | ||| || || ||||| || || ||||| || | || || Sbjct 1878 TTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTA 1937 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGT---CCTTC 153191 |||||| ||||||| | || ||||| | ||||| | ||| ||| ||||| Sbjct 1938 GGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTG---TTTAATCACGTTCTCCTTC 1994 Query 153192 AACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTT---CCACATGTCGTACTGTAAC 153248 | ||| ||| | |||||| |||||| | || | | |||||||||| |||| || Sbjct 1995 AGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCCACATGTCGAACTGGAAG 2054 Query 153249 ACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAG 153307 | || ||||| || || ||||| ||| ||| | | |||| | | Sbjct 2055 ATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGG-CGAT 2113 Query 153308 TTCGCAGCTA-GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAA 153366 || || | | | ||| | | | ||||| ||||| ||| ||| | | ||||| Sbjct 2114 CTC-CATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATGTTGAGCT 2172 Query 153367 CGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCT 153426 | || | ||||||||| ||| | || ||| | || |||||||||||||||| Sbjct 2173 CACGAGCCTGCTCGCTCTCGAACGCGTAGTTCATCAGAATGAACGCGTCGGCCAGACCCT 2232 Query 153427 GGATACCGACGCCGATGGGTCGATGCTTCTCGTTG--CT---GCGCCTCGCGCTCGCTAT 153481 | | ||||| || | || || || | |||| || ||||||| ||| | Sbjct 2233 GCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTC-----CGCCAC 2287 Query 153482 GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGC 153541 ||| |||| ||| ||| || | |||||||||||||| |||||| || || | | Sbjct 2288 GGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTT---TACCAC 2344 Query 153542 CT--TA-AGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGC 153598 || || || |||| | | | | || |||| | ||| | || ||| Sbjct 2345 CTCGTACAGCTTCTGGTAGTTGAA---CACACCGTCCTCCTCCACGAACTTGGGCAGGGC 2401 Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGG 153657 | |||||||| || || || ||| ||| |||| || || |||||| || || |||| Sbjct 2402 CACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATGACCTCGC 2460 Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717 ||| | |||||| | ||| ||||| || ||||| ||| ||||| ||| || Sbjct 2461 AGCACAAGTTGCTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCG 2520 Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACC 153774 |||| ||| | |||||| | || | || ||||||| || | || | ||| |||| Sbjct 2521 CGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACC 2580 Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834 ||| | ||| || | || || |||||||| ||||||| ||||| Sbjct 2581 A---CAGCTGCTGGGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTCTCGT 2637 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 | || |||||||||||| || |||| ||| || |||||| | | || || | Sbjct 2638 AGAGGGCCTCAAACTCGTCCCCCCAGCACTCGTACAGTCCGGGAGCTTCGTTGGGGCAGA 2697 Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 ||| ||| | | | || | ||| | |||||| ||||| || |||||||||| Sbjct 2698 ACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCG 2757 Query 153955 CGTACATGAGGTCGCGCGCCT--TGCAA-TCCTCCGCGCCCATGTTGCGTTTCAGATTGA 154011 |||| | |||||||||||| |||| || | || | ||||| || | | Sbjct 2758 CGTAGAACAGGTCGCGCGCCCGGTGCAGCTCGTTGCCGTGGTTCTTGCGG---AGGTCCA 2814 Query 154012 GCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070 | | | | | | | |||||||||||| || || | ||||| ||| | | || || ||| Sbjct 2815 GGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGC 2873 Query 154071 TT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || |||||||| || |||| |||| || | | |||||| ||||||| |||||| Sbjct 2874 TTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATG 2933 Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187 | || | | | |||||| || ||| | |||| | |||||| | | ||| Sbjct 2934 ATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGC 2993 Query 154188 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTG 154247 | | | | ||| ||||||||| | |||| || ||| ||||| | ||||| | Sbjct 2994 ATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCG 3053 Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 |||||||| |||||| ||||| | | | | |||| ||| ||||| ||| |||||| Sbjct 3054 TAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGA 3113 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATC 154367 |||| || || ||||| ||||| |||||||||| || | || |||||||| Sbjct 3114 CGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATG 3173 Query 154368 ATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGC 154427 | |||||| |||| ||| | | ||| || | ||| ||||| ||||| |||||| Sbjct 3174 AGCTCGTACGTCTCGAGCGCGGCCTGGATGTCGCCCTTGTGGATGCCCAGCGCCACGCGC 3233 Query 154428 ATGAGCATGTGCTGCGGACGTTC 154450 |||| ||| |||||||| || || Sbjct 3234 ATGATCATCTGCTGCGGCCGCTC 3256 >seq150 Length=92316 Score = 127 bits (140), Expect = 2e-24 Identities = 487/757 (64%), Gaps = 27/757 (4%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| |||| ||||| || ||| ||| | ||||||| Sbjct 91004 ACGAGCGTCACTTCATCAAGCACGTGCTGGCTTTCTTTGCTGCCAGCGACGGTATCGTGA 91063 Query 52153 ACATTAACCTCATCGAGTACATGCAGCG--GAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || ||||| | | || | |||| ||| || | || | ||||| | | ||| Sbjct 91064 ACGAGAACCTGGCCATGAACTT-CAGCAATGAA-GTGCAGGTGCCGGAGGCTCGCTGCTT 91121 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 || || || | ||||||| | | ||| ||||| | ||| ||||||||||| Sbjct 91122 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATTGA 91181 Query 52271 GCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCC 52330 | || || || | |||| ||| |||||| ||| ||||| | | || Sbjct 91182 CACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAGACCATCCC 91241 Query 52331 GTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA---GAGCGACACCGCCAC 52387 |||||| || || ||||| ||||| | | |||| ||| | | | || || Sbjct 91242 GTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGCGTGTGTCCTCCTA 91301 Query 52388 GCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTT 52447 | || |||| || ||||||| ||| || ||||| | || || || ||| ||| Sbjct 91302 CCCGG---AGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTT 91358 Query 52448 TGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGA 52507 | | ||||| | | || | | ||| | |||||||| || | ||| || || Sbjct 91359 CTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGA 91418 Query 52508 GTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGAC 52564 | | || || ||||| || ||||||| ||||| || |||||| |||| |||| Sbjct 91419 GCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCTTGCCTCATGTACTCCAAGC- 91477 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACA----CGATCCTGAGCATGTTCAAGGAGGCGG 52620 ||| | | || || |||| | || | ||| ||| | | | || | Sbjct 91478 -----TGATCAACAAGCTGC---CGGAAAGCCGCGTGCACGAGATTGTGCGCG-ACGCTG 91528 Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 ||| || || | ||||| | | | |||| ||||| ||| || | || |||||| Sbjct 91529 TGGTGATTGAGCACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGAACT 91588 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || | ||||||| | ||||||||||| ||||| || || ||| || ||| || Sbjct 91589 CGGGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGCG 91648 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | | ||| || |||||| || ||||| || | ||| ||| || ||||| ||| Sbjct 91649 TGTCTAAGATCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGG 91708 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||| ||||||||||| || |||||||| Sbjct 91709 GCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 91745 >seq898 Length=32307 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 52651 CGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTG 52710 |||| ||||| |||||| | ||||||||| || | ||||||| ||||||||||||| | Sbjct 19318 CGCTCCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCG 19377 Query 52711 TGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGT 52770 |||| || |||||| || ||| || | | ||| || ||||| || || | Sbjct 19378 TGGCTGACCGTCTGCTGTACTCGCTGGGTGTGTCCAAGATCTACAACGTCAAGAACCCAT 19437 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | || | ||| ||| || ||||| |||||||||||||||| ||||||| ||| || | Sbjct 19438 TCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGTGTGG 19497 Query 52831 GCGAGTA 52837 ||||||| Sbjct 19498 GCGAGTA 19504 >seq313 Length=34572 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 24958 CCGCCACGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 24899 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| || ||||| ||||| || || Sbjct 24898 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24839 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 24838 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 24779 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||||||| || || || ||||||||| Sbjct 24778 TCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24731 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || || ||||||||||| Sbjct 24731 GCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCT 24672 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| || ||||| ||||| || || Sbjct 24671 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24612 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 24611 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24552 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||||||| || || || ||||||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24503 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || || ||||||||||| Sbjct 24503 GCCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCT 24444 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| || ||||| ||||| || || Sbjct 24443 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGG 24384 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||||| || || | | || | | ||| | || |||||| Sbjct 24383 GATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 24324 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||||||| || || || |||||||| Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24276 >seq355 Length=43175 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 42315 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 42374 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 42375 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 42433 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 42434 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 42493 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 42494 AAGATCTGCATG 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496236215955120