Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq313 149 6e-31 seq150 104 2e-17 seq355 102 8e-17 seq1255 100 3e-16 seq898 96.9 3e-15 >seq313 Length=34572 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | ||| ||||| || || |||||||| |||| | Sbjct 24730 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24671 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 24670 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24611 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||||||| | |||| |||| | ||||| ||| || Sbjct 24610 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 24552 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||||||| || || || ||||||||| Sbjct 24551 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24503 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| || | ||| ||||| || || |||||||| |||| | Sbjct 24502 CCACCGCGCAGACGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGCTC 24443 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 24442 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 24383 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||||||| | |||| |||| | ||||| ||| || Sbjct 24382 ATGCCCTCCTTGTCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 24324 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| |||||||| || || || |||||||| Sbjct 24323 GTCCAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 24276 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | ||| ||||| || || || ||||| |||| || |||||| Sbjct 24946 CGCAGTACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 24887 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| |||||||| || || || |||||||||||| Sbjct 24886 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 24827 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | || | Sbjct 24826 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAGCGTGAT 24768 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||||||| || || || ||||||||| Sbjct 24767 CGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATG 24731 >seq150 Length=92316 Score = 104 bits (114), Expect = 2e-17 Identities = 299/448 (67%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 47136 GAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGC 47194 || ||| || | || || ||| ||| ||||| |||||||||||||| ||| ||| | Sbjct 91306 GAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTCTGCT-C 91364 Query 47195 GATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAAT 47254 || || | | || | || | |||||||| |||| || || ||||| || Sbjct 91365 TATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCTCGAATGAGCTCAT 91424 Query 47255 CTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGA 47314 | | ||||| ||| |||||||| |||| || || ||| ||| || || || Sbjct 91425 CAGCCGTGACGAGGGCATGCACACCGACTTCGCTTGCCTCATGTACTCCA----AGCTGA 91480 Query 47315 TCAA-AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGC-CGAAGCCGTCGCCATTGAG 47372 |||| ||| || | | ||| ||| || | ||| ||| || || | |||||| Sbjct 91481 TCAACAAGCTGCCGGAAAGCCGCGTGCACGAGAT-TGTGCGCGACGCTGTGGTGATTGAG 91539 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 ||||| | ||| | || || | || | || |||||| ||| | | ||| Sbjct 91540 CACGAGTTCGTGCGCGACTCGCTCCCGGTGGAGTTGATCGGTATGAACTCGGGGCTCATG 91599 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA-GCTAAA-GTATCCCAAGA 47490 | | |||||||| || || |||||||||||||| || | ||| || || |||| Sbjct 91600 TGCCAATACATCGAGTTCGTGGCCGACCGCCTGCT-GTACTCGCTGGGCGTGTCT-AAGA 91657 Query 47491 TTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCA 47550 | ||| || || |||| || ||||| | ||| ||| || ||||| |||||||||||| Sbjct 91658 TCTACAACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCA 91717 Query 47551 ACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| ||||||||||| || ||||| || Sbjct 91718 ACTTCTTCGAGAAGCGTGTGGGCGAGTA 91745 >seq355 Length=43175 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 42317 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 42376 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 42377 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 42436 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 42437 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 42496 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 42497 ATCTGCATG 42505 >seq1255 Length=9666 Score = 100 bits (110), Expect = 3e-16 Identities = 277/423 (65%), Gaps = 15/423 (4%) Strand=Plus/Plus Query 147070 TGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCGCC---CTGATCGACG 147126 ||||| ||||||| ||| ||||| | ||| || ||||| ||||| ||| || ||| Sbjct 2835 TGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACG 2894 Query 147127 TGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGAT------TTT 147180 | |||| || ||| ||||| || || | ||||| | || || ||| || Sbjct 2895 TAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATTGGACGAGCCGTTC 2954 Query 147181 GTGGTGCCGTTGTA----TTGA--GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCG 147234 ||| | | |||| ||| |||| || | | |||| ||| | |||| || ||| Sbjct 2955 GTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTGATGCCGATGCCGCCG 3014 Query 147235 CCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCT 147294 || || || || | ||| ||| | | || | ||||||||| |||||| ||| Sbjct 3015 GCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGGAGTCG 3074 Query 147295 TCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAAC 147354 |||| ||| ||||||| ||||| ||| || ||||| |||||| || || Sbjct 3075 TCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTGAAG 3134 Query 147355 AGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCG 147414 ||||||||| | ||||||||||| | | ||||| | | ||||| || | ||| Sbjct 3135 AGCGTGGGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAGCTCGTACGTCTCGAGCGCG 3194 Query 147415 CTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGT 147474 | | ||| | ||| ||| |||| || |||||||||| ||| ||||| || || Sbjct 3195 GCCTGGATGTCGCCCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGCGGCCGC 3254 Query 147475 TCC 147477 ||| Sbjct 3255 TCC 3257 >seq898 Length=32307 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| || | | ||| | |||||||||| || || || ||||| ||||| || Sbjct 19338 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTA 19396 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || ||| ||||| ||| || | |||| |||||||| | ||| ||| | Sbjct 19397 CTCGCTGGGTGTGTCC-AAGATCTACAACGTCAAGAACCCATTCGACTGGATGGACATGA 19455 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||| |||||||||||||||| ||||||| ||| || ||||| || Sbjct 19456 TCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAGGCGTGTGGGCGAGTA 19504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475475711389040