Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1255 244 1e-59 seq150 156 5e-33 seq898 154 2e-32 seq368 95.1 1e-14 >seq1255 Length=9666 Score = 244 bits (270), Expect = 1e-59 Identities = 851/1306 (65%), Gaps = 43/1306 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| | |||||| ||||| | | |||||||||| |||| ||| || || || || Sbjct 1872 TACATGTTCGACGTGTACGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 1931 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CGTTC 116021 || || |||||||| |||| ||||| ||| || | || |||| ||||| Sbjct 1932 GCCGTAGGCATGGGGGCCACCAGAAGCGAGTTCCGAATTCCGTGTT---TAATCACGTTC 1988 Query 116022 --CTTGAGGGCGTCCCAGT--CGTAGTTGAG-CTTTGTCTCCCCCTCCCACATATCAAAC 116076 ||| || || |||||| | || | | | | ||||||| || ||| Sbjct 1989 TCCTTCAGCGCAGCCCAGTTCCACAGACCCGACGAAGGCGTGATGCCCCACATGTCGAAC 2048 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 |||| |||||| | | || |||||||||| || ||||| || ||||| || |||| Sbjct 2049 TGGAAGATACCCTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCC---AAGCTCC 2105 Query 116137 ---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193 || | || || ||| | || |||| || || ||||| || ||| Sbjct 2106 TTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTTCATG 2165 Query 116194 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGC 116252 || | | |||| ||| || |||||| | || || ||| || | || || Sbjct 2166 TTGAGCTCACGAGCCTGCTCGCTCTCGAACGCGT-AGTTCATCAGAATGAACGCGTCGGC 2224 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 ||||| || ||||||| || | ||||| || | ||| || ||||| || || | | Sbjct 2225 CAGACCCTGCACACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGC 2284 Query 116313 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 |||||| || | || ||| || ||| | || || || ||| || |||||| | Sbjct 2285 CACGGGGTAGTAGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCAC 2344 Query 116373 TTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 || | ||||| | ||| | || || || || || | || |||| || |||| Sbjct 2345 CTCGTACAGCTTCTGGTAGTTGAACACACCG----TCCTCCTCCACGAACTTGGGCAGGG 2400 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 | | |||||||| || ||||| | |||||| |||||||| || | || Sbjct 2401 CCACCGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATGACCTCGC 2460 Query 116492 TACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 ||||| || ||| |||||||||| ||||| || || ||||| ||| Sbjct 2461 AGCACAAGTTG---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGG 2517 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 ||| |||||||| ||||| | ||| ||||||||| | |||| | || || || Sbjct 2518 CCGCGTCCTTGTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGA 2577 Query 116609 TCCATACATCGGCGGCTGGCAC-AGTGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTT 116664 ||| || | || | ||| | ||| ||| || || |||||| ||||||||| Sbjct 2578 ACCA--CAGCTGCTG--GGCGTTAATGGTCTTGCGGGCCCGGCCCTCCGTCTCGTACTTC 2633 Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||||||||||||||||| || ||| |||| ||| | || || || || | | || Sbjct 2634 TCGTAGAGGGCCTCAAACTCGTCCCCC-CAGCACTCGTACAGTCCGGGAGCTTCGTTGGG 2692 Query 116724 ACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 116783 ||||| || ||||| ||| ||| |||| |||||||||||| || |||| ||| Sbjct 2693 GCAGAACAGGCTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCA 2752 Query 116784 GAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 |||||| |||| || || || || || || | | || || || || | | Sbjct 2753 GAGCGCGTAGAACAGGTCGCGCGCCCGGTGCAGCT-CGTTGCCGTGGTTCTTGCGGAGGT 2811 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 ||| || || | | || ||||||||||| |||||||| | |||| || ||||||| Sbjct 2812 CCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGC 2871 Query 116903 GA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | | || |||||| || || | |||||| |||| || ||||| ||||| || | Sbjct 2872 GCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGA 2931 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGT 117019 |||| |||| || ||| || || || || || ||| |||| | || | || Sbjct 2932 TGATCCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGT 2991 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 | ||| || || || || || |||||||| ||||| ||||||| | |||| || Sbjct 2992 GCATGCTGATGCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGT 3051 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 ||||||| || ||||| ||||| ||| | || | |||||||| ||||| || | Sbjct 3052 CGTAGATGCCCTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCG 3111 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 | | || || || ||||||||||| || || |||||||| |||| Sbjct 3112 GACGCGGCGTGCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAA 3157 >seq150 Length=92316 Score = 156 bits (172), Expect = 5e-33 Identities = 362/536 (68%), Gaps = 16/536 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 91752 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 91693 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || |||||||| | ||| | || | | ||| || | | | || Sbjct 91692 GTCCATCCAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAG 91633 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||| ||||| | |||| | | |||||||||||||| | Sbjct 91632 CAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAA 91573 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | ||||||| ||| | |||| | | |||||| ||||||| || || || || Sbjct 91572 CTCCACCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAAT 91513 Query 127465 GGCGTGAATAGTGTCCACCC--CAG---GTCTATT-GCGTAAAGT-CTTGAAGAGTTCCA 127517 |||| | | | | || ||| || || || | ||| | ||| | || Sbjct 91512 CTCGTGCAC-GCGGCTTTCCGGCAGCTTGTTGATCAGCTTGGAGTACATGAGG-----CA 91459 Query 127518 CAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 ||| || || ||| | |||||||||||| |||||| ||||||||||||| |||| Sbjct 91458 -AGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGAC 91400 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | |||||||| || |||||||| | |||||| || | || || ||||| |||||||||| Sbjct 91399 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGA 91340 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA 127696 |||||||||| || || || | |||||||| | ||||| | || | || Sbjct 91339 TCCCCTCCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAG-GACACACGCGGGTCG 91281 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| | | |||||| || || || ||| || || |||| ||||| ||| || Sbjct 91280 CACCACCTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGC 91225 >seq898 Length=32307 Score = 154 bits (170), Expect = 2e-32 Identities = 394/592 (67%), Gaps = 17/592 (3%) Strand=Plus/Minus Query 127221 CCAGCTT-GCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | ||| || || || ||| ||||||||||||| ||||| || | ||| | Sbjct 19516 CCAGCTTTGGAGTACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAG 19457 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || ||||||||||| ||| | || | | ||| || | | Sbjct 19456 ATCATGTCCATCCAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAG 19397 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || ||||| || | ||| |||| ||||||| |||| | |||||||| ||| Sbjct 19396 TACAGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCG 19337 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | ||||||| ||| ||| |||| | | |||||| | |||||| || || Sbjct 19336 ATCAGCTCCACCGGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGC 19277 Query 127460 ACGATGGCGTGAA-TAGTGTCCACCCCAGGTCTATT-----GCGTAAAGT-CTTGAAGAG 127512 ||||| |||| | | | || | ||| | | || || | ||| | ||| | Sbjct 19276 ACGATCTCGTGGACTCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGGCA 19218 Query 127513 TTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572 | || || || ||| | |||||||| || ||| | || |||||||||| Sbjct 19217 T------GCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCT 19164 Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 || || |||||||| || |||||||| | |||||| | || ||||| ||||| ||||| Sbjct 19163 GAGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAA 19104 Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTG 127691 |||||| |||||||| | || ||||| | |||||||| | |||| || || | Sbjct 19103 GAAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGA-CGACACACGCG 19045 Query 127692 TATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCG 127751 || ||||||| | ||||| | || || |||| || || |||| || | ||| | Sbjct 19044 GGTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAG 18985 Query 127752 CTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||| | ||||| || | || ||||||||| | || ||||| Sbjct 18984 CACACAGGAGGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 18933 >seq368 Length=32231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 ||||||||||| | ||||| || ||||| | ||||||||| || ||||| |||||| Sbjct 15950 AGTTGCGCCACAGTTGCGTCACGCACATTCAAAAGCTTCCCGCGAAGTGGGAAAACACCG 16009 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || || ||||| ||||| || | || ||||| || || || | ||| || ||||| || Sbjct 16010 TACTGGTCACGCCCAACAACTGCAAGGCCAGCCACGGCCAGTGCCTTGGCTGAATCTCCT 16069 Query 176903 TCCGTCACGATGAGCGTACACT 176924 || |||| || |||| |||| Sbjct 16070 TCGGTCAAAATAAGCGAGCACT 16091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613474829826360