Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq150 197 2e-45 seq1255 165 1e-35 >seq150 Length=92316 Score = 197 bits (218), Expect = 2e-45 Identities = 565/860 (66%), Gaps = 34/860 (4%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| ||||||||| |||||||||||||||| || || || ||||| | |||| Sbjct 91737 CACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAA 91678 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| ||| ||| ||| | | || || | ||||| | ||| ||||| Sbjct 91677 CGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCGGTCGGCCAC 91618 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| ||||| || | |||| || || | || | || ||||||| Sbjct 91617 GAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCACCGGGAGCGA 91558 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || || ||||| | ||||||| | || || ||| |||||||| || | |||| Sbjct 91557 GTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCT-CGTG-CACG--- 91503 Query 159883 GTACCCCGGCTTGCC--CAAAATGTGG-TC--CTTAAA---CAGGAGGCACGCAAAGTCG 159934 |||||| || || ||| | || ||| | || |||||| || |||||| Sbjct 91502 ------CGGCTTTCCGGCAGCTTGTTGATCAGCTTGGAGTACATGAGGCAAGCGAAGTCG 91449 Query 159935 CAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATC 159994 ||||| |||||||| || ||||| ||| || || | | |||| || ||||||| Sbjct 91448 GTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATGAGG 91389 Query 159995 CCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCAC 160053 || ||| |||||||| || || | ||| ||| | | | | || |||||||||||||| Sbjct 91388 CCGCGCTTCTTGAGCCAGAAGATAGA-GCAGAAGGAGCCCGAGAAGAAGATCCCCTCCAC 91330 Query 160054 GGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGG-----CGTTGGTGTCATGGGTCCAC 160108 ||| ||||| |||| || | ||| | |||| || ||| || |||| Sbjct 91329 GGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTCGCA-----CCAC 91275 Query 160109 CTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAAT 160168 || ||||| | ||| ||||| | || |||||| ||| ||||| ||| | || Sbjct 91274 CTGAGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCAGG 91215 Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCG 160228 ||||| ||| | |||||||| || |||| ||| |||||| | || | | Sbjct 91214 TGGTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAG 91155 Query 160229 TGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACC 160288 || | || |||||||| ||||| ||| |||||| | |||||| | |||||| Sbjct 91154 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACT 91095 Query 160289 TCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAA 160348 || | |||| | |||| || | || || | |||||| ||| ||||||||| Sbjct 91094 TCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGAAA 91035 Query 160349 GCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTC 160408 |||| |||||| |||||| || | ||||| || |||| || |||||| | Sbjct 91034 GCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGAG---GTTCGCCCAGTCATTG 90978 Query 160409 ACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTAC 160468 | ||| || |||| || | ||| || || |||| || |||| || | |||||| Sbjct 90977 AGGTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTAC 90918 Query 160469 ATGGCCCAGATGGCGTGCTC 160488 || ||| | | ||||||| Sbjct 90917 ATCTGCCACACGTCGTGCTC 90898 >seq1255 Length=9666 Score = 165 bits (182), Expect = 1e-35 Identities = 514/780 (66%), Gaps = 27/780 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| | || || || |||||||| Sbjct 1484 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 1540 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||||| || ||||| | | | Sbjct 1541 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAGTAAGCTTGCTAATGGT 1600 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||| || ||||| || ||| ||| |||| || || || | Sbjct 1601 CGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCACCACGGTCAG 1659 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | | ||||||| |||||||||||||||||| || ||| || Sbjct 1660 CAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTGA 1719 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 || | ||| | || ||| | ||| | || || |||| || | ||| | Sbjct 1720 CGTTGTCAGGGATGGATT-TCACCTTCTGCACGGAACCACCGTCGTTCAGGA-TCTGGTT 1777 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||||| | ||||||||||| || ||||| ||| | Sbjct 1778 GCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCAGGTACTTGTTCAC 1837 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || |||| ||||| | || || ||| ||| ||| | || |||| Sbjct 1838 GATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGTGTACGGCTCGAT 1897 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||| |||||||| | |||||||| || ||||| |||||||| |||| || || Sbjct 1898 GGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGGGGCCACCAGAAG 1957 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 ||||| || | |||| ||| || | |||||| | | ||||| | || | Sbjct 1958 CGAGTTCCGAATTCCGTGTTTAATCACGTTCTCCTTCAGCGCAGCCCAGT--TCCACAGA 2015 Query 204373 ACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 | | || | | |||||||||||||||||| ||||| || | ||| | || Sbjct 2016 CCCGACGAAGGCGTGATGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGAT 2075 Query 204428 CCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCG 204487 |||| | ||||| || || | ||| | || | || ||| | |||||| Sbjct 2076 CCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGGCGATCTCCATCGACGTCTCCATGGAA 2135 Query 204488 TGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCAAA 204546 ||||| |||||||| ||||| | | | || | || || |||| | | || || Sbjct 2136 GCGTAGTAGATGGTCTCGAAGATGTTCATG-TTGAGCTCACGAGCCTGCTCGCTCTCGAA 2194 Query 204547 CGC-CAGACC--CAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 ||| || | ||| ||| ||| |||| |||| |||||||| ||||| |||| ||| Sbjct 2195 CGCGTAGTTCATCAGAATG---AACGCGTCGGCCAGACCCTGCACACCGATCCCCACCGG 2251 Score = 127 bits (140), Expect = 3e-24 Identities = 464/714 (65%), Gaps = 12/714 (2%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | ||||||||| ||||||||||| | ||||||||||| |||||| |||| Sbjct 2487 CCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAAGGGCACC 2546 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTC 205042 || |||| ||||| | ||| ||| | ||||| | | || | | ||| Sbjct 2547 CCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTAATGGTCTTG 2606 Query 205043 ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA-CAC 205101 | | || | | |||||| || ||| || ||| |||| || || | ||| Sbjct 2607 CGGGCCCGGCCCTCCGTCTCGTACTTCTCGTAGAGGGCCTCAAACTCGTCCCCCCAGCAC 2666 Query 205102 GTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCAC 205161 || ||| || ||| || ||||| || | ||| ||| | || | | || Sbjct 2667 -TCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGGCTCCATTTGCCATTGGACTCGAC 2725 Query 205162 CCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCC 205221 ||||| ||| || || ||| || ||| || |||| ||||| || || |||| | | Sbjct 2726 CCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAGAACAGGTCGCGCGCCCGG-TGCA 2784 Query 205222 G-TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGC 205279 | |||| || ||||||| | |||||| || || | | |||||||||||||||| Sbjct 2785 GCTCGTTGCCGTGGTTCTTGCGGAGGTCCAGG-AACTCGAACACGTCGGCGTGCCACGGC 2843 Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTC 205339 || | | | ||| | | ||| | |||| || ||||||||||| ||| | | Sbjct 2844 TCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCC 2903 Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTG 205399 | ||||||| || |||||||| || | | || |||| | |||||||||| | Sbjct 2904 GTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATTGGACGAGCCGTTCGTGCCTCGG 2963 Query 205400 ATG--GCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457 ||| || | | || | | |||| ||| ||| || ||||| | |||| Sbjct 2964 ATGTAGCTGTTGGTG--GCGCGGATGTTGTGCATGCTGATGCCGATGCCGCCGGCCCACT 3021 Query 205458 TGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516 ||| ||| ||||||| |||| || ||| ||||||||| ||||||| |||||| | Sbjct 3022 TGGAGATGCACGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATGGAGTCGTCCTGC 3080 Query 205517 AGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTG 205576 | | || ||| ||||||| | ||||| | | ||||| |||| |||||||||| Sbjct 3081 ATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTGAAGAGCGTG 3140 Query 205577 GGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACG 205630 ||| | ||||| ||||| ||||| ||||| | ||| ||||| ||| || Sbjct 3141 GGGGTCGCGTGCGTGAAGAACTTCTGGCTCATGAGCTCGTACGTCTCGAGCGCG 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795113245623760