Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq150 269 3e-67 seq898 250 2e-61 seq313 141 9e-29 seq355 122 9e-23 seq381 98.7 1e-15 >seq150 Length=92316 Score = 269 bits (298), Expect = 3e-67 Identities = 605/896 (68%), Gaps = 22/896 (2%) Strand=Plus/Minus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || |||||||| ||||| || || || || || |||| || || || | ||| Sbjct 91745 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 91686 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 | || || ||||| | ||||||| ||| | || ||| | ||||| | | Sbjct 91685 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTACAGCAGGCGG 91626 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 ||||||||||||||||||||||| ||||| | | || | || | || |||| Sbjct 91625 TCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCAACTCCACC 91566 Query 132790 GGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 || |||| ||| | ||| ||| |||| || | || |||||| || || || Sbjct 91565 GGGAGCGAGTCGCGCACGAACTCGT-GCTCAATCACCACAGCGTCGCGCACAATCTCGTG 91507 Query 132849 AACGCGCGCCGCGCTC-GGCCG-TTGC--ACCAAATGCTTGAA---CATCAAGCAAGCAA 132901 ||||| || || ||| | ||| | || ||||| | ||| | |||||| | Sbjct 91506 CACGCG----GCTTTCCGGCAGCTTGTTGATCA---GCTTGGAGTACATGAGGCAAGCGA 91454 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 ||||| |||| ||||||||| | | ||||| || || ||| | | ||||||| Sbjct 91453 AGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCA 91394 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||||||||| || |||||||| || || | | ||| |||||| ||||||| |||| Sbjct 91393 TGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCT 91334 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAG 133080 | ||||| || || |||| ||| ||||| | | | || | || || || ||| Sbjct 91333 CCACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACAC-GCGGGTCGCACCAC 91275 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTT--TGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | |||||||| | || |||||| |||||||||| || || |||||||| || || Sbjct 91274 CTGAGCGCCCAGTGAGC--TTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCA 91217 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 || ||||| | | | ||| ||||| ||||| ||| || | |||| Sbjct 91216 GGTGGTCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCG 91157 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 |||| | |||||| |||||||| || |||||||| ||||| || ||||| |||||||| Sbjct 91156 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCA 91097 Query 133259 CTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 |||| | ||| | | |||| || ||||| ||||| ||||||||||| || || | Sbjct 91096 CTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCAAAGA 91037 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCG 133378 | |||||||||||||||||||| || |||||||||| | | | | ||||||| Sbjct 91036 AAGCCAGCACGTGCTTGATGAAGTGACGCTCGTTGTTCGTGAGGTTCGCCCAGTCATTGA 90977 Query 133379 TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACA 133438 ||| | || ||| | ||||||| | ||||| || || ||||| || || ||||||| Sbjct 90976 GGTCGTGCACCAAGTCGAGCTCCTCGGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACA 90917 Query 133439 TACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCG 133494 | ||||| ||| | || ||||| || | ||| || ||| |||||| ||| Sbjct 90916 TCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCGGTTGGGGTTCTCG 90861 >seq898 Length=32307 Score = 250 bits (276), Expect = 2e-61 Identities = 529/775 (68%), Gaps = 26/775 (3%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | ||| ||||||||||||||||| || ||||| | ||| | || | || | Sbjct 19393 AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTCG-AGTTCATGCCGAT 19335 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||||| |||| ||| || ||| ||| |||| || || |||||| | Sbjct 19334 CAGCTCCACCGGGAGCGAGTCGCAGACGAACTCGT-GCTCAATCTTCACAGCGTCGCGCA 19276 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATC 132891 |||| || || || || ||| ||| | ||| ||||| ||||| | ||| Sbjct 19275 CGATCTCGTGGACTCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATG 19223 Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 | ||| || || || |||| ||||||||| | || | ||||| ||| | Sbjct 19222 AGGCATGCGAAATCCGTGTGCATGCCCTCGTCGCGACTGATCATCTCGTTCGAGAAGCTG 19163 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | || |||||||||||||| || |||||||| || | | | || |||||| ||| Sbjct 19162 AGCCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAG 19103 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 |||| |||||| || | || || |||| ||| ||||| | | | | | || | Sbjct 19102 AAGATGCCCTCCACCGAGGCAAACGCCAGCAGACGCTCCGGGTAGGACGACACAC-GCGG 19044 Query 133072 G-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | || ||| || ||||| | ||| || | | ||||||||| ||||||||||| || Sbjct 19043 GTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGC 18984 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGA 133187 || | || | |||| ||| || | | ||| ||||| ||||| ||| Sbjct 18983 ACACAGGA---GGTGGTTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAGCAGCGA 18927 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 || | |||||||| | |||||| |||||||| || || ||||| ||||| || ||||| Sbjct 18926 GTAGACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGAGCCTC 18867 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | ||| |||||||| | ||| | | ||||||| || |||||||||||||| || Sbjct 18866 GGGCACTTGCACTTCGTTGCTGAAGTTCATGGCCAGATTCTCATTGACGATGCCGTCACT 18807 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC 133367 ||| ||||| ||||| ||||||||||||||||| |||||||||||||| | | | | Sbjct 18806 GGCAGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGCTTCGC 18747 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||||| ||| | |||||| | ||||||| | ||||| || || |||||||| Sbjct 18746 CCAGTCGTTGAGGTCGTGCACCAGGTCGAGCTCCTCGGCCGTCCAGAAGGAAGCCTCGGC 18687 Query 133428 TTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 18686 CTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAAGAGCACGAAGCGG 18632 >seq313 Length=34572 Score = 141 bits (156), Expect = 9e-29 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||||| | ||||| ||| | | Sbjct 24732 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 24791 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||| | ||||| ||||| || |||||| |||| Sbjct 24792 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 24849 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 24850 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACA 24909 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||||||||| |||| |||||| || | ||||| Sbjct 24910 ACATCCAGAAGGAGTCGACGCTGCACCTGGTACTGCGTCTGCGTGGCGG 24958 >seq355 Length=43175 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 42504 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 42445 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 42444 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 42386 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 42385 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 42326 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 42325 CATCCAGAAGG 42315 >seq381 Length=39271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 34310 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 34369 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||||||||||| ||||| |||| ||||| ||||||||||| Sbjct 34370 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGT 34423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500146409632640