Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1255 190 3e-43 seq150 127 3e-24 seq898 123 3e-23 seq368 96.9 4e-15 seq1443 93.3 5e-14 >seq1255 Length=9666 Score = 190 bits (210), Expect = 3e-43 Identities = 365/535 (68%), Gaps = 5/535 (1%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||||| || || || ||||||||||| || || || | || || |||| Sbjct 3157 TTCACGCACGCGACCCCCACGCTCTTCAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 3098 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||||| | || | |||| || || ||| | ||||| |||| ||| |||| | Sbjct 3097 TGCTTCCTGCTGGCCATGCAGGACGACTCCATCGAGGGCATCTACGACACGCTCAAGCAG 3038 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 || || ||||| |||||||| || || ||||| || ||| || | || | ||| Sbjct 3037 TGCGCGTGCATCTCCAAGTGGGCCGGCGGCATCGGCATCAGCATGCACAACATCCGCGCC 2978 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | ||| || |||| || || || || |||| || || || ||||| ||| Sbjct 2977 ACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGGATCATCCCCATGCTGCGC 2918 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || || |||| ||| |||||||| || |||| | || | |||||||| || || Sbjct 2917 GTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTC 2858 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || |||| || ||||| |||||||| || | | |||||||| || | || ||| Sbjct 2857 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGACCTCCGCAAGAAC 2798 Query 112062 CAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 112121 || || | ||| | ||| ||||| || |||| ||| |||||| | || |||||| Sbjct 2797 CACGGCAACGAGCTGCACCGGGCGCGCGACCTGTTCTACGCGCTCTGGGTCCCCGATCTC 2738 Query 112122 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCC 112181 ||||||||||| || ||| | |||||| ||| || || || || || | || ||| Sbjct 2737 TTCATGAAGAGGGTCGAGTCCAATGGCAAATGGAGCCTGTTCTGCCCCAACGAAGCTCCC 2678 Query 112182 GGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || | ||| ||| | ||| || |||||||| ||||||||| ||||||||| Sbjct 2677 GGACTGTACGAGTGCTG-GGGGGACGAGTTTGAGGCCCTCTACGAGAAGTACGAG 2624 >seq150 Length=92316 Score = 127 bits (140), Expect = 3e-24 Identities = 191/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| |||| |||||| | || || | |||||| | Sbjct 91174 CTCATTGACACGTACATCAAGGACGGTGTCGAGAAGGACCACCTGCTGCGTGCCATCGAG 91233 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || || | |||||||| | ||||| | | ||||| || | || | Sbjct 91234 ACCATCCCGTGCGTCACGAAGAAAGCTCACTGGGCGCTCAGGTGGTGCGACCCGC-GT-G 91291 Query 102168 CGT--TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 || |||| | ||||| || | || ||||| || ||||| ||||||||||| | Sbjct 91292 TGTCCTCCTACCCGGAGCGTCTGCTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGG 91351 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||||||||| |||| | |||||||||||||| || |||||||| |||||| |||||| Sbjct 91352 GCTCCTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCAGCTTCT 91411 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGG 102313 | || ||||| ||| ||||||||||| Sbjct 91412 CGAATGAGCTCATCAGCCGTGACGAGGG 91439 >seq898 Length=32307 Score = 123 bits (136), Expect = 3e-23 Identities = 189/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| | |||||||| || ||| | || ||| || Sbjct 18933 CTCATTGACACGTACATCAAGGACACCGTGGAGAAGAACCACCTCCTGTGTGCTATCGAA 18992 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GTC 102166 || | || || | || |||||||| | ||||| | ||||||| || | || Sbjct 18993 ACGATCCCGTGCGTCCAGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACCCGCGTGTG 19052 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||| ||| | ||||| || | || ||||| | || ||||| ||||||||||| || Sbjct 19053 TCGT-CCTACCCGGAGCGTCTGCTGGCGTTTGCCTCGGTGGAGGGCATCTTCTTCTCGGG 19111 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||||| ||| | | | |||||||||||||| || |||||||| || ||| ||||||| Sbjct 19112 CTCCTTTTGCTCGGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGGCTCAGCTTCTC 19171 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| | ||| ||| |||||||| Sbjct 19172 GAACGAGATGATCAGTCGCGACGAGGG 19198 >seq368 Length=32231 Score = 96.9 bits (106), Expect = 4e-15 Identities = 242/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||||||||||||||| || | ||| |||||||| | ||| |||| | |||| |||| Sbjct 14871 AACCCGTACCGATACCTTCAGCACCATTCACGAGCAGCATCGGGATGATAGGCACGTAGT 14930 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC-TCT- 175956 | | || |||| ||| |||||||| || ||| | | | |||||| ||| Sbjct 14931 AAACGGGTTCAACTGGGAATCCATCGTCGTCGGCGTAGCGCAACAGCGCATCATCGTCTT 14990 Query 175957 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 176015 ||| || | | || | | |||||| ||| || ||||| || | | || Sbjct 14991 CGGGG--AATACCAAGCGCGTGTGCTTTTGC-AGCAACGTGAAGATGTAACGAGGGCTAG 15047 Query 176016 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075 ||||||||||| ||| | || |||||||||||||| |||| | ||||| || Sbjct 15048 CGGCATCCTTACCTCCCTGCAACCGGGTACCAAACTGACCTGACGGATACAGAAGCGGGA 15107 Query 176076 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG---AGAGAGA 176132 ||||| || |||| | |||| | ||||| |||||||| || || | || || Sbjct 15108 GGTTGTTGGAGCCCACGAAGTCCTGCGCCATATTGACAATAGT---CGAGTGTAGCGATG 15164 Query 176133 CTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCA 176192 |||||||||||||||| || | | ||| | | |||||||||| ||||| |||| Sbjct 15165 CTTCACCGTGGTGGTAGGCTGTGTGCTCACTGCAGTAGCCCGCCAACTGTGCCACCTTCA 15224 >seq1443 Length=13085 Score = 93.3 bits (102), Expect = 5e-14 Identities = 278/425 (65%), Gaps = 23/425 (5%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| || ||||| ||||| || || |||| || | ||||| ||||| |||| || Sbjct 7979 GATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTT 8038 Query 15938 CGTTGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 ||| |||| | || || | || | ||| | ||| ||||||||||| || | Sbjct 8039 CGTGCCGGCAAGCACCACCACGCCCTCACTCGAGTTGAAA-CCATCCATCTCGACCAGCA 8097 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC--AGCACTG--CGT 16052 ||||||| | || | ||| || || || || |||||| || | | | | Sbjct 8098 GCTGGTTCAGCGTGTTTTCACGCTCGTCGTT---------ACCACCCGAGAAGTTACCCT 8148 Query 16053 TGCT---TTC-----CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT 16104 |||| | | |||| ||||| || ||||| ||||| || || || || |||| Sbjct 8149 TGCTACGTGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATTTG 8208 Query 16105 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 16164 | || || | | || ||||| || ||||| | ||||| || || |||||||| | Sbjct 8209 CACGGGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTCGA 8268 Query 16165 CAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGG 16224 || | || | ||||| || ||| || || ||| ||||| || |||| | Sbjct 8269 TGAAATCTGAGCCGGAAATGCTGAAGAAAGGCACGCTAGCCTCACCAGCCGTGGCCTTCG 8328 Query 16225 CGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGG 16284 | || ||||||||||| ||||| ||| ||| |||| || ||||| || ||||||| Sbjct 8329 CCAGCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTTGG 8388 Query 16285 CGCCA 16289 | ||| Sbjct 8389 CACCA 8393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620709648079120