Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pluvialis_20[genbank_20GCA_5F001314425.1_202015-10- 14] 4,221 sequences; 53,621,061 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1443 174 2e-38 seq1255 118 1e-21 seq898 100 3e-16 seq115 100 3e-16 seq150 87.8 2e-12 >seq1443 Length=13085 Score = 174 bits (192), Expect = 2e-38 Identities = 334/484 (69%), Gaps = 19/484 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || || || ||||| || || || | || | ||||||||||| | ||||| Sbjct 7980 ATCTGCCGGTCAAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCCGCGCGGTTC 8039 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 || |||||| || || | ||| |||| | || |||||| ||||| || || Sbjct 8040 GTGCCGGCAAGCACCACCACGCC---CTCACTCGAGTTGAAACCATCCATCTCGACCAGC 8096 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG------GAGGGCATACCACCTGCCGAA 11667 |||||||| | ||| | ||||||||| ||||| ||| |||| | ||| | Sbjct 8097 AGCTGGTTCAGCGTGTTTTCACGCTCGTCGTTACCACCCGAGAAGTTACC-CTTGCT--A 8153 Query 11668 CGCTTCTTAC-CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 || | | | | ||||| || || |||||||||||||| |||||||| || ||||| Sbjct 8154 CG-TGCACGCGCCACAGCATCGATTTCATCGATGAATACAATACACGGAGCATTTGCACG 8212 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| | ||| || ||||| ||||| || || || || ||||||||||| | ||| Sbjct 8213 GGCCTCCTTGAACAGATCACGCACACGGGACGGACCCACGCCGACGAACATCTCGATGAA 8272 Query 11787 GTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | || | | | || ||||| ||| || || ||| ||||||||| |||| || | Sbjct 8273 ATCTGAGCCGGAAATGCTGAA-GAAAGGCACGCTAGCCTCACCAGCCGTGGCCTTCGCCA 8331 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | ||||||||||| ||||| || | |||| |||| || || || |||||||||||||| Sbjct 8332 GCAGAGTCTTACCAGTACCGGGCGGACCAACGAGCAGAGCACCCTTGGGGATCTTGGCAC 8391 Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || | | |||||| | || ||||||||||||| |||| | |||| || Sbjct 8392 CAAGCTCTGTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTTCT 8451 Query 11966 TGGC 11969 |||| Sbjct 8452 TGGC 8455 >seq1255 Length=9666 Score = 118 bits (130), Expect = 1e-21 Identities = 1037/1656 (63%), Gaps = 59/1656 (4%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| |||| || ||| Sbjct 1533 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGAAGTAAGCTTG 1592 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 || ||||| | || | ||| | ||||||| ||| ||| | |||| Sbjct 1593 CTAATGGTCGGGTCGGCAATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCACCA 1652 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || ||||| | || ||| | | ||| || | || ||||| || ||||||||| Sbjct 1653 CGGTCAGCAGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTG 1712 Query 109594 TTCTTGATATCATCGGGAATG---TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 | ||||| | || || ||| | ||| || || | || ||||| | |||| Sbjct 1713 TCCTTGACGTTGTCAGGGATGGATTTCACC---TTCTGCACGGAACCACCGTCGTTCAGG 1769 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCG-TCAACAAGATG 109709 || | | || ||| || ||||| || | || | || || ||| || | | Sbjct 1770 ATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCCTCATCAGG-TA 1828 Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 |||||| || | || ||||| ||||| || || ||| ||||| | |||||| Sbjct 1829 CTTGTTCACGATCGTGAACTCACCGGCAAGCACACGGCGATTGTACATGTTCGACGTGTA 1888 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 || |||| ||||||||||||| ||||| || ||||| ||||| || |||||||| || Sbjct 1889 CGGCTCGATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTAGGCATGGGGGC 1948 Query 109830 CATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTA--CCCGCTCACG--CATTGCGTCCC 109885 || ||||| ||| || | || || |||| | || || | || || ||| Sbjct 1949 CACCAGAAGCGAGTTCCGAATTCC----GTGTTTAATCACGTTCTCCTTCAGCGCAGCCC 2004 Query 109886 AATCATAACGACC--ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACC 109943 | | | |||| || || | | ||||||| || || | | ||| Sbjct 2005 AGTTCCACAGACCCGACGAAGGCGTGATGC-----CCCACATGTCGAACTGGAAGATACC 2059 Query 109944 CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGA 110003 || ||||| || |||| ||| ||||||||| || ||| ||| | ||| Sbjct 2060 CTTGCTGGCAGGCGATCCCTGGAACGTCTCGTACGGGCCAAGCTCCTTGGCGATCTCCAT 2119 Query 110004 TGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG---CG 110060 || | ||| | | || | || || ||||| || || | ||| |||| || Sbjct 2120 CGACGTCTCCATGGAAGCGTAGTAGATGGTCTCGAAGATGTT--CATGT-TGAGCTCACG 2176 Query 110061 AGACTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 || || || | ||||| | | || || | |||| ||| | || || |||||||| | Sbjct 2177 AGCCTGCTCGCTCTCGAACGCGTAGTTCATCA-GAATGAACGCGTCGGCCAGACCCTGCA 2235 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 |||||| || | ||||| || |||||| || || || | |||||||| Sbjct 2236 CACCGATCCCCACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCGCCACGGGGTAGT 2295 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 ||||| || || ||| ||||| || ||||| ||| | || | || | Sbjct 2296 AGTTGACATCAATCACCTTGTTGAGGTTGCGGGTCACCACCTTTACCACCTCGTACAGCT 2355 Query 110240 TGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAA 110299 | | ||| | |||| |||| || | || | ||||| || || | ||||| | Sbjct 2356 TCTGGTAGTTGAACACAC-CGTC--CTCCTCCACGAACTTGGGCAGGGCCACCGACGCCA 2412 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTT 110357 | |||||||| | ||| || | || ||||| |||| | || |||||||| Sbjct 2413 GGTTGCACACCGCCACCTCATCG--GGCGACGTGTACTCCATGACCTCGCAGCACAAGTT 2470 Query 110358 GGAACTCTTA---ATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTT 110414 | ||| ||| |||| ||||| ||| || || ||| |||| || ||||| Sbjct 2471 G---CTCGAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTT 2527 Query 110415 ATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATC 110474 || |||||| | || || || || |||| | | || ||||| ||| || | Sbjct 2528 GTACAGCATGAAGGGCACCCCCGTCTCGATCTGGGCGTCCAGGATGGCGAACCA--CAGC 2585 Query 110475 GGC--GGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 || |||| | || |||| || | || ||| ||||||||| ||| | | Sbjct 2586 TGCTGGGCGTTAATGGTCTTGCGG--GCCCGGCCCTCCGTCTCGTACTTCTCGTAGAGGG 2643 Query 110531 CCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 ||||||| || | || | ||| || | || || || | || ||| ||||| ||| Sbjct 2644 CCTCAAACTCGTCCCCCCAGCAC-TCGTACAGTCCGGGAGCTTCGTTGGGGCAGAACAGG 2702 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||| || ||| ||| |||||||||||||| || || || | ||| | ||| || Sbjct 2703 CTCCATTTGCCATTGGACTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGCGCGTAG 2762 Query 110650 AAAAGGTCACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 || ||||| || || | || | || | || ||||| ||| || |||| || || Sbjct 2763 AACAGGTCGCGCGCCCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGGAGGTCCAGGAACTC 2821 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACC 110765 | | || | |||||| || || || |||| |||| || ||||| || | || Sbjct 2822 GAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCGCC 2881 Query 110766 CGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 |||||| || ||||| || ||| | ||||| || | ||||| || || || |||| Sbjct 2882 GCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATCCCATT 2941 Query 110826 GGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCAT 110885 ||| || || || || | || | || |||| || |||| ||| || || Sbjct 2942 GGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCGCGGATGTTGTGCATGCTGAT 3001 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 || || || || |||||||| || || |||| |||| || | || || || Sbjct 3002 GCCGATGCCGCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCC 3061 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 || || || || ||| |||| | || ||||| || |||| ||| ||||| ||||| Sbjct 3062 CTCGATGGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGT 3121 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || |||||||| || || ||||| || |||| Sbjct 3122 GCCGGCGTTGAAGAGCGTGGGGGTCGCGTGCGTGAA 3157 >seq898 Length=32307 Score = 100 bits (110), Expect = 3e-16 Identities = 374/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | | | |||||||| || ||||| || | ||| ||||| | ||||| Sbjct 19504 TACTCGCCCACACGCCTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 19445 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGACGA 119327 |||| || || || ||| ||| |||| | ||| | | ||| ||||| Sbjct 19444 CAGTCGAATGGGTTCTTGACGTTGTAGATCTTGGACACACCCAGCGAGTACAGCAGACGG 19385 Query 119328 TCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACAC 119387 || | || ||||||| || | | |||| ||| ||||| || || || | | Sbjct 19384 TCAGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCACC 19325 Query 119388 GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGA 119447 ||||| | ||| || ||| | | ||| |||| |||||| || |||||| ||| Sbjct 19324 GGGAGCGAGTCGCAGACGAACTCGTGCTCAATCTTCACAGCGTCGCGCACGATCTCGTGG 19265 Query 119448 A-TAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GC-AAATT 119502 | | | ||| || | ||||| || || || | || | | || |||| Sbjct 19264 ACTCGGCTCTC-CGGCAGCTTGTT---CACCAGCTTGGAGTACATGAGGCATGCGAAATC 19209 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | || | ||||| | || ||| ||| | ||| || ||||| || |||||||||| Sbjct 19208 CGTGTGCATGCCCT-CGTCGCGACTGATCATCTCGTTCGAGAAGCTGAGCCCAGGCATGA 19150 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | ||||| ||||| |||| | ||||| || || |||||||||||||||| Sbjct 19149 GGCCGCGCTTCTTGAGCCAGAAGACCGAGCAAAAGGAGCCCGAGAAGAAGATGCCCTCCA 19090 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCGAACCACTTG 119678 | |||| || || | |||||||| | ||| ||| | | |||| |||||||| Sbjct 19089 CCGAGGCAAACGCCAGCAGACGCTCCG-GGTAGGACGACACACGCGGGTCGCACCACTTG 19031 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC 119738 || ||||||||||| || || | ||| |||| |||| ||| || | || || Sbjct 19030 AGTGCCCAGTTGGCTTTCTTCTGGACGCACGGGATCGTTTCGATAGCACACAGGAGGTGG 18971 Query 119739 TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 ||||| || | ||||| || || | |||||||| Sbjct 18970 TTCTTCTCCACGGTGTCCTTGATGTACGTGTCAATGAG 18933 >seq115 Length=54650 Score = 100 bits (110), Expect = 3e-16 Identities = 193/281 (69%), Gaps = 13/281 (5%) Strand=Plus/Plus Query 11589 GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTC-TGTTCACGCTCATCGTTGG 11647 ||||||||||||||| || ||||||||||||| |||| | |||| | | || Sbjct 33931 GTCGAAACCGTCCATCTCCACCAGAAGCTGGTTGAGCGTCATCTTCATGGCC-----TGC 33985 Query 11648 AGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGA 11707 | | | | | | |||| | ||||| |||||||||||| |||||||| | || Sbjct 33986 TGCTCCTTCAGCTT-----ACGCGTTCCACCGATAGCGTCAATCTCGTCGATGAAGATGA 34040 Query 11708 TACACGGTTGGTTGGCACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 | |||||| || | | || | | ||||| || ||||| || || ||| || ||| Sbjct 34041 TGCACGGTGCCTTC-CGCTTGGCCGACTCGAACAGGTCACGCACGCGACGCGCGCCCACA 34099 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || ||| |||| || |||| | | |||| | | | ||| || || | ||| Sbjct 34100 CCCACGTACATTTCCTCGAACTCCGATCCAGACGAGTAGAAGAACGGTACGCCTGCCTCG 34159 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGG 11867 |||||||| ||||||||||| || ||||||||||| ||||| Sbjct 34160 CCAGCGATAGCTCGAGCGAGCAGCGTCTTACCCGTGCCAGG 34200 >seq150 Length=92316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 373/578 (65%), Gaps = 15/578 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| |||||||| || ||||| || | || ||||| | ||||| Sbjct 91745 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 91686 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTT-GACCAACTTGTTTCAGAAGACG 119326 |||| || || || |||| ||| |||| | | ||| | || ||| || || Sbjct 91685 CAGTCGAACGGGTTCTTGGCGTTGTAGATCTTAGACACGCCCAGCGAGTA-CAGCAGGCG 91627 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| || ||||||| |||| | |||| |||| |||||||| || | | | || Sbjct 91626 GTCGGCCACGAACTCGATGTATTGGCACATGAGCCCCGAGTTCATACCGATCA-ACTCCA 91568 Query 119387 C-GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | ||||| | ||| | | ||| | | ||| ||| ||||||| || ||| || || Sbjct 91567 CCGGGAGCGAGTCGCGCACGAACTCGTGCTCAATCACCACAGCGTCGCGCACAATCTCGT 91508 Query 119446 GAATAGTTTCTGTC-GATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAAT 119501 | | | || || | | ||||| ||| | || | || | | || || Sbjct 91507 GCAC-GCGGCTTTCCGGCAGCTTGTTGATCA---GCTTGGAGTACATGAGGCAAGCGAAG 91452 Query 119502 TCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATG 119561 || || | || || || || |||||||||||| ||||| || || |||||| Sbjct 91451 TCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTCGAGAAGCTGAGACCGGGCATG 91392 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 || || | ||||| ||||| ||||| | || || || || |||||||| |||||| Sbjct 91391 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCCGAGAAGAAGATCCCCTCC 91332 Query 119622 ACACAGGCGAAAGCGAATAGACGCTC--AGCAAAAGGTC-GAGACTTGTCGAACCACTTG 119678 || ||| || || | |||||||| | | ||| | | | |||| ||||| || Sbjct 91331 ACGGCGGCAAAGGCCAGCAGACGCTCCGGGTAGGAGGACACACGCGGGTCGCACCACCTG 91272 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC 119738 || ||||||| || || | | ||| |||| || | |||||| | || || Sbjct 91271 AGCGCCCAGTGAGCTTTCTTCGTGACGCACGGGATGGTCTCGATGGCACGCAGCAGGTGG 91212 Query 119739 TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 | ||| || |||| ||||| || || | |||||||| Sbjct 91211 TCCTTCTCGACACCGTCCTTGATGTACGTGTCAATGAG 91174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588944924153800